Evaluated articles

Showing page 44 of 45 pages of list content

Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows

This article has 26 authors:
1. Ryan Connor
2. Migun Shakya
3. David A. Yarmosh
4. Wolfgang Maier
5. Ross Martin
6. Rebecca Bradford
7. J. Rodney Brister
8. Patrick S. G. Chain
9. Courtney A. Copeland
10. Julia di Iulio
11. Bin Hu
12. Philip Ebert
13. Jonathan Gunti
14. Yumi Jin
15. Kenneth S. Katz
16. Andrey Kochergin
17. Tré LaRosa
18. Jiani Li
19. Po-E Li
20. Chien-Chi Lo
21. Sujatha Rashid
22. Evguenia S. Maiorova
23. Chunlin Xiao
24. Vadim Zalunin
25. Lisa Purcell
26. Kim D. Pruitt
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Mar 11, 2024Latest activity Nov 4, 2022
Evolutionary-scale prediction of atomic-level protein structure with a language model

This article has 15 authors:
1. Zeming Lin
2. Halil Akin
3. Roshan Rao
4. Brian Hie
5. Zhongkai Zhu
6. Wenting Lu
7. Nikita Smetanin
8. Robert Verkuil
9. Ori Kabeli
10. Yaniv Shmueli
11. Allan dos Santos Costa
12. Maryam Fazel-Zarandi
13. Tom Sercu
14. Salvatore Candido
15. Alexander Rives
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 2 listsLatest version Mar 17, 2023Latest activity Nov 4, 2022
Transcription-replication interactions reveal principles of bacterial genome regulation

This article has 10 authors:
1. Andrew W. Pountain
2. Peien Jiang
3. Tianyou Yao
4. Ehsan Homaee
5. Yichao Guan
6. Magdalena Podkowik
7. Bo Shopsin
8. Victor J. Torres
9. Ido Golding
10. Itai Yanai
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Oct 23, 2022Latest activity Nov 4, 2022
Genome and life-history evolution link bird diversification to the end-Cretaceous mass extinction

This article has 15 authors:
1. Jacob S. Berv
2. Sonal Singhal
3. Daniel J. Field
4. Nathanael Walker-Hale
5. Sean W. McHugh
6. J. Ryan Shipley
7. Eliot T. Miller
8. Rebecca T. Kimball
9. Edward L. Braun
10. Alex Dornburg
11. C. Tomomi Parins-Fukuchi
12. Richard O. Prum
13. Benjamin M. Winger
14. Matt Friedman
15. Stephen A. Smith
Reviewed by Arcadia Science

This article has 16 evaluationsAppears in 1 listLatest version Aug 2, 2024Latest activity Apr 14, 2023
Restriction Endonuclease-Based Modification-Dependent Enrichment (REMoDE) of DNA for Metagenomic Sequencing

This article has 6 authors:
1. Syed Usman Enam
2. Joshua L. Cherry
3. Susan R. Leonard
4. Ivan N. Zheludev
5. David J. Lipman
6. Andrew Z. Fire
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Jan 31, 2023Latest activity May 16, 2023
Iterative immunostaining combined with expansion microscopy and image processing reveals nanoscopic network organization of nuclear lamina

This article has 11 authors:
1. Elina Mäntylä
2. Toni Montonen
3. Lucio Azzari
4. Salla Mattola
5. Markus Hannula
6. Maija Vihinen-Ranta
7. Jari Hyttinen
8. Minnamari Vippola
9. Alessandro Foi
10. Soile Nymark
11. Teemu O. Ihalainen
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 1 listLatest version Aug 1, 2023Latest activity Apr 14, 2023
A novel eukaryotic RdRP-dependent small RNA pathway represses antiviral immunity by controlling an ERK pathway component in the black-legged tick

This article has 9 authors:
1. Canran Feng
2. Kyosuke Torimaru
3. Mandy Yu Theng Lim
4. Li-Ling Chak
5. Masami Shiimori
6. Kosuke Tsuji
7. Tetsuya Tanaka
8. Junko Iida
9. Katsutomo Okamura
Reviewed by Arcadia Science

This article has 6 evaluationsAppears in 1 listLatest version Sep 20, 2021Latest activity Apr 14, 2023
Modulation of tooth regeneration through opposing responses to Wnt and BMP signals in teleosts

This article has 7 authors:
1. Tyler A. Square
2. Emma J. Mackey
3. Shivani Sundaram
4. Naama C. Weksler
5. Zoe Z. Chen
6. Sujanya N. Narayanan
7. Craig T. Miller
Reviewed by Arcadia Science

This article has 24 evaluationsAppears in 1 listLatest version Dec 1, 2023Latest activity Apr 14, 2023
Cooperative actin filament nucleation by the Arp2/3 complex and formins maintains the homeostatic cortical array in Arabidopsis epidermal cells

This article has 4 authors:
1. Liyuan Xu
2. Lingyan Cao
3. Jiejie Li
4. Christopher J Staiger
Reviewed by Arcadia Science

This article has 13 evaluationsAppears in 1 listLatest version Dec 6, 2023Latest activity Apr 14, 2023
Effects of interspecies interactions on marine community ecosystem function

This article has 5 authors:
1. Michael Daniels
2. Astrid K.M. Stubbusch
3. Noelle A. Held
4. Olga T. Schubert
5. Martin Ackermann
Reviewed by Arcadia Science

This article has 12 evaluationsAppears in 1 listLatest version Aug 26, 2022Latest activity Apr 14, 2023
CLASP2 facilitates dynamic actin filament organization along the microtubule lattice

This article has 8 authors:
1. N. C. Rodgers
2. E. J. Lawrence
3. A. V. Sawant
4. N. Efimova
5. G. Gonzalez-Vasquez
6. T. T. Hickman
7. I. Kaverina
8. M. Zanic
Reviewed by Arcadia Science

This article has 12 evaluationsAppears in 1 listLatest version Mar 1, 2023Latest activity Apr 14, 2023
Magnesium Modulates Bacillus subtilis Cell Division Frequency

This article has 2 authors:
1. Tingfeng Guo
2. Jennifer K. Herman
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 1 listLatest version Jan 26, 2023Latest activity Apr 17, 2023
Endogenous GFP tagging in the diatom Thalassiosira pseudonana

This article has 3 authors:
1. Onyou Nam
2. Irina Grouneva
3. Luke C. M. Mackinder
Reviewed by Arcadia Science

This article has 6 evaluationsAppears in 1 listLatest version Oct 1, 2022Latest activity Apr 14, 2023
GutMeta: online microbiome analysis and interactive visualization with build-in curated human gut microbiome database

This article has 5 authors:
1. Yiqi Jiang
2. Yanfei Wang
3. Lijia Che
4. Qian Zhou
5. Shuaicheng Li
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Sep 27, 2022Latest activity Apr 14, 2023
aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

This article has 13 authors:
1. Zoé Pochon
2. Nora Bergfeldt
3. Emrah Kırdök
4. Mário Vicente
5. Thijessen Naidoo
6. Tom van der Valk
7. N. Ezgi Altınışık
8. Maja Krzewińska
9. Love Dalén
10. Anders Götherström
11. Claudio Mirabello
12. Per Unneberg
13. Nikolay Oskolkov
Reviewed by Arcadia Science

This article has 14 evaluationsAppears in 1 listLatest version Oct 23, 2023Latest activity Apr 14, 2023
Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome

This article has 22 authors:
1. Min Wang
2. Lucas J. Osborn
3. Sunit Jain
4. Xiandong Meng
5. Allison Weakley
6. Jia Yan
7. William J. Massey
8. Venkateshwari Varadharajan
9. Anthony Horak
10. Rakhee Banerjee
11. Daniela S. Allende
12. E. Ricky Chan
13. Adeline M. Hajjar
14. Zeneng Wang
15. Alejandra Dimas
16. Aishan Zhao
17. Kazuki Nagashima
18. Alice G. Cheng
19. Steven Higginbottom
20. Stanley L. Hazen
21. J. Mark Brown
22. Michael A. Fischbach
Reviewed by Arcadia Science

This article has 16 evaluationsAppears in 1 listLatest version Jun 1, 2023Latest activity Apr 14, 2023
Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies

This article has 15 authors:
1. Francesco Cicconardi
2. Edoardo Milanetti
3. Erika C. Pinheiro de Castro
4. Anyi Mazo-Vargas
5. Steven M. Van Belleghem
6. Angelo Alberto Ruggieri
7. Pasi Rastas
8. Joseph Hanly
9. Elizabeth Evans
10. Chris D. Jiggins
11. W. Owen McMillan
12. Riccardo Papa
13. Daniele Di Marino
14. Arnaud Martin
15. Stephen H. Montgomery
Reviewed by Arcadia Science

This article has 20 evaluationsAppears in 1 listLatest version Sep 12, 2023Latest activity Apr 14, 2023
Molecular mechanisms of tubulogenesis revealed in the sea star hydro-vascular organ

This article has 4 authors:
1. Margherita Perillo
2. S. Zachary Swartz
3. Cosmo Pieplow
4. Gary M. Wessel
Reviewed by Arcadia Science

This article has 14 evaluationsAppears in 1 listLatest version May 9, 2023Latest activity Apr 14, 2023
iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria

This article has 7 authors:
1. Simon Roux
2. Antonio Pedro Camargo
3. Felipe H. Coutinho
4. Shareef M. Dabdoub
5. Bas E. Dutilh
6. Stephen Nayfach
7. Andrew Tritt
Reviewed by Arcadia Science

This article has 12 evaluationsAppears in 1 listLatest version Apr 21, 2023Latest activity Apr 14, 2023
Algae drive convergent bacterial community assembly at low dilution frequency

This article has 2 authors:
1. Kaumudi H. Prabhakara
2. Seppe Kuehn
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Jun 1, 2023Latest activity Apr 14, 2023

Evaluated articles

Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows

Evolutionary-scale prediction of atomic-level protein structure with a language model

Transcription-replication interactions reveal principles of bacterial genome regulation

Genome and life-history evolution link bird diversification to the end-Cretaceous mass extinction

Restriction Endonuclease-Based Modification-Dependent Enrichment (REMoDE) of DNA for Metagenomic Sequencing

Iterative immunostaining combined with expansion microscopy and image processing reveals nanoscopic network organization of nuclear lamina

A novel eukaryotic RdRP-dependent small RNA pathway represses antiviral immunity by controlling an ERK pathway component in the black-legged tick

Modulation of tooth regeneration through opposing responses to Wnt and BMP signals in teleosts

Cooperative actin filament nucleation by the Arp2/3 complex and formins maintains the homeostatic cortical array in Arabidopsis epidermal cells

Effects of interspecies interactions on marine community ecosystem function

CLASP2 facilitates dynamic actin filament organization along the microtubule lattice

Magnesium Modulates Bacillus subtilis Cell Division Frequency

Endogenous GFP tagging in the diatom Thalassiosira pseudonana

GutMeta: online microbiome analysis and interactive visualization with build-in curated human gut microbiome database

aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome

Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies

Molecular mechanisms of tubulogenesis revealed in the sea star hydro-vascular organ

iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria

Algae drive convergent bacterial community assembly at low dilution frequency