Evaluated articles

Showing page 2 of 41 pages of list content

Predictive design of tissue-specific mammalian enhancers that function in vivo in the mouse embryo

This article has 8 authors:
1. Shenzhi Chen
2. Vincent Loubiere
3. Ethan W. Hollingsworth
4. Sandra H. Jacinto
5. Atrin Dizehchi
6. Jacob Schreiber
7. Evgeny Z. Kvon
8. Alexander Stark
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Dec 24, 2025Latest activity Dec 28, 2025
ProFam: Open-Source Protein Family Language Modelling for Fitness Prediction and Design

This article has 11 authors:
1. Jude Wells
2. Alex Hawkins Hooker
3. Micha Livne
4. Weining Lin
5. David Miller
6. Christian Dallago
7. Nicola Bordin
8. Brooks Paige
9. Burkhard Rost
10. Christine Orengo
11. Michael Heinzinger
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 1 listLatest version Dec 21, 2025Latest activity Dec 26, 2025
RemoteFoldSet: Benchmarking Structural Awareness of Protein Language Models

This article has 2 authors:
1. Zinnia Ma
2. Neville P. Bethel
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Sep 23, 2025Latest activity Dec 26, 2025
Label-free biochemical imaging and timepoint analysis of neural organoids via deep learning-enhanced Raman microspectroscopy

This article has 7 authors:
1. Dimitar Georgiev
2. Ruoxiao Xie
3. Daniel Reumann
4. Xiaoyu Zhao
5. Álvaro Fernández-Galiana
6. Mauricio Barahona
7. Molly M. Stevens
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Sep 30, 2025Latest activity Dec 22, 2025
Beyond P-values: A Multi-Metric Framework for Robust Feature Selection and Predictive Modeling

This article has 6 authors:
1. Raelynn Chen
2. Attri Ghosh
3. Jie Hu
4. Yong Chen
5. Jason H. Moore
6. Ruowang Li
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Oct 6, 2025Latest activity Dec 20, 2025
Weakly supervised learning uncovers phenotypic signatures in single-cell data

This article has 5 authors:
1. Anastasia Litinetskaya
2. Soroor Hediyeh-zadeh
3. Amir Ali Moinfar
4. Mohammad Lotfollahi
5. Fabian J. Theis
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Jul 29, 2024Latest activity Dec 20, 2025
Geno-pheno characterization of crop rhizospheres: An integrated Raman spectroscopy and microbiome approach in conventional and organic agriculture

This article has 7 authors:
1. Yejin Son
2. Peisheng He
3. Mathew Baldwin
4. Guangyu Li
5. Zijian Wang
6. April Z. Gu
7. Jenny Kao-Kniffin
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Jun 17, 2025Latest activity Dec 17, 2025
Dynamic protrusions mediate unique crawling motility in Asgard Archaea (Promethearchaeota)

This article has 13 authors:
1. Philipp Radler
2. Tobias Viehboeck
3. Zhen-Hao Luo
4. Nevena Maslać
5. Katharina Schmidt
6. Robert Hauschild
7. Masaru Nobu
8. Silvia Bulgheresi
9. Theresia E.B. Stradal
10. Klemens Rottner
11. Hiroyuki Imachi
12. Michael Sixt
13. Christa Schleper
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Dec 1, 2025Latest activity Dec 11, 2025
The Rhizarian amoeba Filoreta ramosa develops a neuron-like arborized network using conserved cytoskeletal mechanisms

This article has 2 authors:
1. Sarah L. Guest
2. Scott C. Dawson
Reviewed by Arcadia Science

This article has 5 evaluationsAppears in 1 listLatest version Oct 25, 2025Latest activity Dec 11, 2025
RamanOmics Decodes Spatial Vibrational-Molecular Architecture and Rewiring in Aging and Repair

This article has 23 authors:
1. Ke Zhang
2. Xingjian Chen
3. Francesco Monticolo
4. Salvatore Sorrentino
5. Haochun Huang
6. Claire Callahan
7. Yueqing Qiao
8. Judy Zhou
9. Sonia Brodowska
10. Styliani Sapantzi
11. Jianhuan Qi
12. Yinghan Wu
13. Thai Nam Son Dang
14. Francesca Viggiani
15. Chia-Kang Ho
16. Yanxin Xu
17. Koseki J. Kobayashi-Kirschvink
18. Thang Mung
19. Hemali Phatnani
20. Zhixun Dou
21. Jeon Woong Kang
22. Peter T. C. So
23. Jian Shu
Reviewed by Arcadia Science

This article has 14 evaluationsAppears in 1 listLatest version Dec 8, 2025Latest activity Dec 10, 2025
Time-resolved phylogenomics analysis reveals patterns in biosphere nutrient limitation through Earth history

This article has 11 authors:
1. Zhanghan Ni
2. Troy Osborn
3. Juntao Zhong
4. Adrian Gonzalez
5. Will Puzella
6. Aya Klos
7. Bryan Le
8. Alec Leonetti
9. Joanne S Boden
10. Eva E Stueeken
11. Rika E Anderson
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Nov 14, 2025Latest activity Dec 9, 2025
Enhancer-driven random gene overexpression (ERGO): a method to study gene function in Chlamydomonas

This article has 5 authors:
1. Yuliia Lihanova
2. Rory J. Craig
3. Mia Pribbernow
4. Reimund Goss
5. Severin Sasso
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Sep 7, 2025Latest activity Dec 9, 2025
Simulation based-inference of epidemiological and phylodynamic models via Neural Posterior Estimation

This article has 4 authors:
1. Francesco Pinotti
2. Julien Thézé
3. Xavier Bailly
4. Guillaume Fournié
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Nov 28, 2025Latest activity Dec 8, 2025
Lipid-Mediated Control of ER Function During Apoptosis

This article has 4 authors:
1. José Luis Garrido-Huarte
2. Josep Fita-Torró
3. Amparo Pascual-Ahuir
4. Markus Proft
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 1 listLatest version Dec 1, 2025Latest activity Dec 8, 2025
Raman2RNA: Live-cell label-free prediction of single-cell RNA expression profiles by Raman microscopy

This article has 13 authors:
1. Koseki J. Kobayashi-Kirschvink
2. Shreya Gaddam
3. Taylor James-Sorenson
4. Emanuelle Grody
5. Johain R. Ounadjela
6. Baoliang Ge
7. Ke Zhang
8. Jeon Woong Kang
9. Ramnik Xavier
10. Peter T. C. So
11. Tommaso Biancalani
12. Jian Shu
13. Aviv Regev
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Dec 1, 2021Latest activity Jan 2, 2026
Hematopoietic stem cell gene therapy improves outcomes in a clinically relevant mouse model of multiple sulfatase deficiency

This article has 16 authors:
1. Vi Pham
2. Lucas Tricoli
3. Xinying Hong
4. Parith Wongkittichote
5. Carlo Castruccio Castracani
6. Amaliris Guerra
7. Lars Schlotawa
8. Laura A. Adang
9. Amanda Kuhs
10. Margaret M. Cassidy
11. Owen Kane
12. Emily Tsai
13. Maximiliano Presa
14. Cathleen Lutz
15. Stefano B. Rivella
16. Rebecca C. Ahrens-Nicklas
Reviewed by Arcadia Science

This article has 6 evaluationsAppears in 1 listLatest version Nov 1, 2024Latest activity Dec 8, 2025
Generation of Chlorella vulgaris starch mutants and their biomass and lipid productivities under different culture media

This article has 5 authors:
1. Ana C. Ramos
2. Anna Hamilton
3. Isabel Molina
4. Patrick J. McGinn
5. Sharon Regan
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Oct 29, 2025Latest activity Dec 8, 2025
Open Raman Microscopy (ORM): A Modular Hardware and Software Framework for Accessible Raman Imaging

This article has 15 authors:
1. Kevin T. Uning
2. Henry Brisebois
3. Conor C. Horgan
4. Magnus Jensen
5. Yue Yuan
6. Shiyue Liu
7. Elzbieta Stepula
8. Steven Vanuytsel
9. Vishal Kumar
10. Stephen Goldrick
11. Robert D. Knight
12. Martin A. B. Hedegaard
13. Michael B. Albro
14. Mads S. Bergholt
15. Michael R. Thomas
Reviewed by Arcadia Science

This article has 5 evaluationsAppears in 1 listLatest version Oct 26, 2025Latest activity Dec 22, 2025
Energy trade-offs under fluctuating light govern bioenergetics and growth in Chlamydomonas reinhardtii

This article has 11 authors:
1. Ana Pfleger
2. Erwann Arc
3. Shuang Zhang
4. Palak Chaturvedi
5. Emma Antoine
6. Erich Gnaiger
7. Arindam Ghatak
8. Leila Afjehi-Sadat
9. Wolfram Weckwerth
10. Ilse Kranner
11. Thomas Roach
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version May 23, 2025Latest activity Dec 6, 2025
Multiple retinoic acid pathway factors function together during development of a mollusc

This article has 2 authors:
1. T. Kim Dao
2. J. David Lambert
Reviewed by Arcadia Science

This article has 3 evaluationsAppears in 1 listLatest version Dec 3, 2025Latest activity Dec 5, 2025

Evaluated articles

Predictive design of tissue-specific mammalian enhancers that function in vivo in the mouse embryo

ProFam: Open-Source Protein Family Language Modelling for Fitness Prediction and Design

RemoteFoldSet: Benchmarking Structural Awareness of Protein Language Models

Label-free biochemical imaging and timepoint analysis of neural organoids via deep learning-enhanced Raman microspectroscopy

Beyond P-values: A Multi-Metric Framework for Robust Feature Selection and Predictive Modeling

Weakly supervised learning uncovers phenotypic signatures in single-cell data

Geno-pheno characterization of crop rhizospheres: An integrated Raman spectroscopy and microbiome approach in conventional and organic agriculture

Dynamic protrusions mediate unique crawling motility in Asgard Archaea (Promethearchaeota)

The Rhizarian amoeba Filoreta ramosa develops a neuron-like arborized network using conserved cytoskeletal mechanisms

RamanOmics Decodes Spatial Vibrational-Molecular Architecture and Rewiring in Aging and Repair

Time-resolved phylogenomics analysis reveals patterns in biosphere nutrient limitation through Earth history

Enhancer-driven random gene overexpression (ERGO): a method to study gene function in Chlamydomonas

Simulation based-inference of epidemiological and phylodynamic models via Neural Posterior Estimation

Lipid-Mediated Control of ER Function During Apoptosis

Raman2RNA: Live-cell label-free prediction of single-cell RNA expression profiles by Raman microscopy

Hematopoietic stem cell gene therapy improves outcomes in a clinically relevant mouse model of multiple sulfatase deficiency

Generation of Chlorella vulgaris starch mutants and their biomass and lipid productivities under different culture media

Open Raman Microscopy (ORM): A Modular Hardware and Software Framework for Accessible Raman Imaging

Energy trade-offs under fluctuating light govern bioenergetics and growth in Chlamydomonas reinhardtii

Multiple retinoic acid pathway factors function together during development of a mollusc