Evaluated articles

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Open-source cell culture automation system with integrated cell counting for passaging microplate cultures

This article has 10 authors:
1. Greg Courville
2. Shivanshi Vaid
3. Alexis Toruño
4. Paul Lebel
5. Joana P. Cabrera
6. Preethi Raghavan
7. Axel Jacobsen
8. George Bell
9. Manuel D. Leonetti
10. Rafael Gómez-Sjöberg
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Feb 13, 2025Latest activity Jun 9, 2025
Optogenetic actin network assembly on lipid bilayer uncovers the network density-dependent functions of actin-binding proteins

This article has 2 authors:
1. Kei Yamamoto
2. Makito Miyazaki
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Jun 4, 2025Latest activity Jun 9, 2025
Learning the Shape of Evolutionary Landscapes: Geometric Deep Learning Reveals Hidden Structure in Phenotype-to-Fitness Maps

This article has 3 authors:
1. Manuel Razo-Mejia
2. Madhav Mani
3. Dmitri A. Petrov
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 1 listLatest version May 7, 2025Latest activity Jun 9, 2025
AI-Guided Discovery and Optimization of Antimicrobial Peptides Through Species-Aware Language Model

This article has 4 authors:
1. Daehun Bae
2. Minsang Kim
3. Jiwon Seo
4. Hojung Nam
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version May 25, 2025Latest activity Jun 6, 2025
Divergent organelle allocation in the evolution of sperm gigantism revealed from subcellular quantification of nematode sperm with electron microscopy

This article has 2 authors:
1. Rebecca Schalkowski
2. Asher D. Cutter
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Jun 3, 2025Latest activity Jun 6, 2025
A platform for lab management, note-keeping and automation

This article has 3 authors:
1. Aubin Fleiss
2. Alexander S. Mishin
3. Karen S. Sarkisyan
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Jul 11, 2024Latest activity Jun 6, 2025
De novo design of miniprotein agonists and antagonists targeting G protein-coupled receptors

This article has 46 authors:
1. Edin Muratspahić
2. David Feldman
3. David E. Kim
4. Xiangli Qu
5. Ana-Maria Bratovianu
6. Paula Rivera-Sánchez
7. Federica Dimitri
8. Jason Cao
9. Brian P. Cary
10. Matthew J. Belousoff
11. Peter Keov
12. Qingchao Chen
13. Yue Ren
14. Justyn Fine
15. Isaac Sappington
16. Thomas Schlichthaerle
17. Jason Z. Zhang
18. Arvind Pillai
19. Ljubica Mihaljević
20. Magnus Bauer
21. Susana Vázquez Torres
22. Amir Motmaen
23. Gyu Rie Lee
24. Long Tran
25. Xinru Wang
26. Inna Goreshnik
27. Dionne K. Vafeados
28. Justin E. Svendsen
29. Parisa Hosseinzadeh
30. Nicolai Lindegaard
31. Matthäus Brandt
32. Yann Waltenspühl
33. Kristine Deibler
34. Luke Oostdyk
35. William Cao
36. Lakshmi Anantharaman
37. Lance Stewart
38. Lauren Halloran
39. Jamie B. Spangler
40. Patrick M. Sexton
41. Bryan L. Roth
42. Brian E. Krumm
43. Denise Wootten
44. Christopher G. Tate
45. Christoffer Norn
46. David Baker
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 2 listsLatest version Jun 5, 2025Latest activity Jun 6, 2025
Calpain cleaves the carboxyl terminus of TRPV1 and modulates receptor tachyphylaxis

This article has 9 authors:
1. Jinyan Jiang
2. Xiaochen Wang
3. Jing Yang
4. Shuwen Gao
5. Jixuan Xu
6. Jiao Liu
7. Yun Wang
8. Ping Liang
9. Ying Zhang
Reviewed by Arcadia Science

This article has 5 evaluationsAppears in 1 listLatest version May 2, 2025Latest activity Jun 6, 2025
From Likelihood to Fitness: Improving Variant Effect Prediction in Protein and Genome Language Models

This article has 4 authors:
1. Charles W. J. Pugh
2. Paulina G. Nuñez-Valencia
3. Mafalda Dias
4. Jonathan Frazer
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version May 24, 2025Latest activity Jun 6, 2025
RamanMAE: Masked Autoencoders Enable Efficient Molecular Imaging by Learning Biologically Meaningful Spectral Representations

This article has 2 authors:
1. Santosh Kumar Paidi
2. Parul Maheshwari
Reviewed by Arcadia Science

This article has 8 evaluationsAppears in 1 listLatest version May 21, 2025Latest activity May 27, 2025
Reconstitution of actomyosin networks in cell-sized liposomes reveals distinct mechanical roles of cytoskeletal organization in membrane shape remodeling

This article has 3 authors:
1. Makito Miyazaki
2. Fahmida Sultana Laboni
3. Taeyoon Kim
Reviewed by Arcadia Science

This article has 11 evaluationsAppears in 1 listLatest version May 22, 2025Latest activity May 27, 2025
The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes

This article has 10 authors:
1. Roni Odai
2. Michèle Leemann
3. Tamim Al-Murad
4. Minhal Abdullah
5. Lena Shyrokova
6. Tanel Tenson
7. Vasili Hauryliuk
8. Janani Durairaj
9. Joana Pereira
10. Gemma C. Atkinson
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 1 listLatest version May 16, 2025Latest activity May 20, 2025
Bacterial Wastewater-Based Epidemiology Using Surface-Enhanced Raman Spectroscopy and Machine Learning

This article has 7 authors:
1. Liam K. Herndon
2. Yirui Zhang
3. Fareeha Safir
4. Babatunde Ogunlade
5. Halleh B. Balch
6. Alexandria B. Boehm
7. Jennifer A. Dionne
Reviewed by Arcadia Science

This article has 3 evaluationsAppears in 1 listLatest version Jan 17, 2025Latest activity May 14, 2025
Have protein-ligand co-folding methods moved beyond memorisation?

This article has 4 authors:
1. Peter Škrinjar
2. Jérôme Eberhardt
3. Janani Durairaj
4. Torsten Schwede
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Feb 10, 2025Latest activity May 14, 2025
Venomous Maggots? A first exploration of the toxin arsenal of larval stages of the horse fly Tabanus autumnalis

This article has 4 authors:
1. Jonas Krämer
2. Ludwig Dersch
3. Andreas Vilcinskas
4. Tim Lüddecke
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version May 8, 2025Latest activity May 12, 2025
Metagenomes and Metagenome-Assembled Genomes from Tidal Lagoons at a New York City Waterfront Park

This article has 21 authors:
1. Sally Kong
2. Eliana Abrams
3. Yehuda Binik
4. Christina Cappelli
5. Mathew Chu
6. Taiyo Cornett
7. Isayah Culbertson
8. Epifania Garcia
9. Jada Henry
10. Kristy Lam
11. DB Lampman
12. Grace Morenko
13. Illusion Rivera
14. Tanasia Swift
15. Isabella Torres
16. Rayven Velez
17. Elliot Waxman
18. Serena Wessely
19. Anthony Yuen
20. Casey K. Lardner
21. JL Weissman
Reviewed by Arcadia Science

This article has 6 evaluationsAppears in 1 listLatest version May 4, 2025Latest activity May 6, 2025
AI.zymes: A Modular Platform for Evolutionary Enzyme Design

This article has 8 authors:
1. Lucas P. Merlicek
2. Jannik Neumann
3. Abbie Lear
4. Vivian Degiorgi
5. Moor M. de Waal
6. Tudor‐Stefan Cotet
7. Adrian J. Mulholland
8. H. Adrian Bunzel
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2025Latest activity May 5, 2025
In silico discovery of nanobody binders to a G-protein coupled receptor using AlphaFold-Multimer

This article has 14 authors:
1. Edward P. Harvey
2. Jeffrey S. Smith
3. Joseph D. Hurley
4. Alyana Granados
5. Ernst W. Schmid
6. Jason G. Liang-Lin
7. Steffanie Paul
8. Emily M. Meara
9. Matthew P. Ferguson
10. Victor G. Calvillo-Miranda
11. Debora S. Marks
12. Johannes C. Walter
13. Andrew C. Kruse
14. Katherine J. Susa
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 2 listsLatest version Mar 10, 2025Latest activity May 2, 2025
Amino acid repeat signatures underlying human-pathogen interactions

This article has 7 authors:
1. Anjali Kumari Singh
2. Nagashree Rachote
3. Anushka Agrawal
4. Vaidehi Sharma
5. Keertana Sai Kappagantula
6. Rajashekar Varma Kadumuri
7. Sreenivas Chavali
Reviewed by Arcadia Science

This article has 8 evaluationsAppears in 1 listLatest version Mar 18, 2025Latest activity May 2, 2025
The Mp CAFA gene encodes a ciliary protein required for spermatozoid motility in the liverwort Marchantia polymorpha

This article has 2 authors:
1. Mizuki Morita
2. Katsuyuki T. Yamato
Reviewed by Arcadia Science

This article has 3 evaluationsAppears in 1 listLatest version May 31, 2025Latest activity May 2, 2025

Evaluated articles

Open-source cell culture automation system with integrated cell counting for passaging microplate cultures

Optogenetic actin network assembly on lipid bilayer uncovers the network density-dependent functions of actin-binding proteins

Learning the Shape of Evolutionary Landscapes: Geometric Deep Learning Reveals Hidden Structure in Phenotype-to-Fitness Maps

AI-Guided Discovery and Optimization of Antimicrobial Peptides Through Species-Aware Language Model

Divergent organelle allocation in the evolution of sperm gigantism revealed from subcellular quantification of nematode sperm with electron microscopy

A platform for lab management, note-keeping and automation

De novo design of miniprotein agonists and antagonists targeting G protein-coupled receptors

Calpain cleaves the carboxyl terminus of TRPV1 and modulates receptor tachyphylaxis

From Likelihood to Fitness: Improving Variant Effect Prediction in Protein and Genome Language Models

RamanMAE: Masked Autoencoders Enable Efficient Molecular Imaging by Learning Biologically Meaningful Spectral Representations

Reconstitution of actomyosin networks in cell-sized liposomes reveals distinct mechanical roles of cytoskeletal organization in membrane shape remodeling

The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes

Bacterial Wastewater-Based Epidemiology Using Surface-Enhanced Raman Spectroscopy and Machine Learning

Have protein-ligand co-folding methods moved beyond memorisation?

Venomous Maggots? A first exploration of the toxin arsenal of larval stages of the horse fly Tabanus autumnalis

Metagenomes and Metagenome-Assembled Genomes from Tidal Lagoons at a New York City Waterfront Park

AI.zymes: A Modular Platform for Evolutionary Enzyme Design

In silico discovery of nanobody binders to a G-protein coupled receptor using AlphaFold-Multimer

Amino acid repeat signatures underlying human-pathogen interactions

The Mp CAFA gene encodes a ciliary protein required for spermatozoid motility in the liverwort Marchantia polymorpha