Evaluated articles

Showing page 1 of 40 pages of list content

Generative AI-based design of hybrid transcriptional activator proteins with new DNA-binding specificity

This article has 7 authors:
1. Sota Okuda
2. Atsushi Minami
3. Michio Aiko
4. Kohei Uetsuka
5. Kazuteru Miyazaki
6. Kazumasa Ohtake
7. Daisuke Kiga
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Dec 31, 2025Latest activity Jan 3, 2026
Beyond one-size-fits-all: single-cell transcriptomic signatures predict drug efficacy and reveal responder subgroups in endometriosis

This article has 10 authors:
1. Raúl Pérez-Moraga
2. Cemsel Bafligil
3. Sarah Harden
4. Santiago García-Martín
5. María José Jiménez-Santos
6. Ioanna Tiniakou
7. Sophie Ribeiro-Volturo
8. Line Gies
9. María Teresa Pérez Zaballos
10. Cristina Fernández-Molina
Reviewed by Arcadia Science

This article has 3 evaluationsAppears in 1 listLatest version Dec 12, 2025Latest activity Jan 3, 2026
The phylogenetic context for the origin of a unique purple-green photosymbiosis

This article has 7 authors:
1. Sergio A. Muñoz-Gómez
2. Megan E.S. Sørensen
3. Shahed U.A. Shazib
4. Mann Kyoon Shin
5. Thilo Bauer
6. Martin Kreutz
7. Sebastian Hess
Reviewed by Arcadia Science

This article has 7 evaluationsAppears in 1 listLatest version Dec 22, 2025Latest activity Jan 1, 2026
Ancestral Protein Reconstruction of a membrane trafficking GTPase uncovers unanticipated properties of the ancestral protein and of modern Arf1 GTPases

This article has 5 authors:
1. Marine Alves
2. Mandeep Sivia
3. Kristína Záhonová
4. Catherine L. Jackson
5. Joel B. Dacks
Reviewed by Arcadia Science

This article has 6 evaluationsAppears in 1 listLatest version Oct 28, 2025Latest activity Dec 30, 2025
10,239 whole genomes with multi-omic and clinical health information as the Korean population multi-omic reference dataset

This article has 51 authors:
1. Kyungwhan An
2. Sungwon Jeon
3. Yoonsung Kwon
4. Changhan Yoon
5. Yookyung Choi
6. Yeonsu Jeon
7. Hyoung-Jin Choi
8. Jihun Bhak
9. Dong-Hyun Shin
10. Hyomin Lee
11. Yeo Jin Kim
12. Eun-Seok Shin
13. Hyojung Ryu
14. Asta Blazyte
15. Sangsoo Park
16. Juok Cho
17. Dan Bolser
18. Jongbum Jeon
19. Soobok Joe
20. Jin Ok Yang
21. Jong-Hwan Kim
22. Byoung-Chul Kim
23. Jungeun Kim
24. Neung-Hwa Park
25. Siwoo Lee
26. Hee-jeong Jin
27. Younghwa Baek
28. Dooyoung Jung
29. Yunsung Cho
30. Yong Min Ahn
31. Hyung-Tae Jung
32. Byungjoo Ham
33. Yoon Young Choi
34. Seung Ah Choi
35. Seung-Ki Kim
36. Ji Hoon Phi
37. Heon Yung Gee
38. Borah Kim
39. Woojae Myung
40. Chong Kun Cheon
41. Dong Uk Kim
42. Gang-Nam Jin
43. Hojune Lee
44. Kyun Shik Chae
45. Chang Geun Kim
46. BongHee Lee
47. Jaesuk Lee
48. Semin Lee
49. George Church
50. Haeyoung Jeong
51. Jong Bhak
Reviewed by Arcadia Science

This article has 3 evaluationsAppears in 1 listLatest version Nov 17, 2025Latest activity Dec 28, 2025
Predictive design of tissue-specific mammalian enhancers that function in vivo in the mouse embryo

This article has 8 authors:
1. Shenzhi Chen
2. Vincent Loubiere
3. Ethan W. Hollingsworth
4. Sandra H. Jacinto
5. Atrin Dizehchi
6. Jacob Schreiber
7. Evgeny Z. Kvon
8. Alexander Stark
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Dec 24, 2025Latest activity Dec 28, 2025
ProFam: Open-Source Protein Family Language Modelling for Fitness Prediction and Design

This article has 11 authors:
1. Jude Wells
2. Alex Hawkins Hooker
3. Micha Livne
4. Weining Lin
5. David Miller
6. Christian Dallago
7. Nicola Bordin
8. Brooks Paige
9. Burkhard Rost
10. Christine Orengo
11. Michael Heinzinger
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 1 listLatest version Dec 21, 2025Latest activity Dec 26, 2025
RemoteFoldSet: Benchmarking Structural Awareness of Protein Language Models

This article has 2 authors:
1. Zinnia Ma
2. Neville P. Bethel
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Sep 23, 2025Latest activity Dec 26, 2025
Label-free biochemical imaging and timepoint analysis of neural organoids via deep learning-enhanced Raman microspectroscopy

This article has 7 authors:
1. Dimitar Georgiev
2. Ruoxiao Xie
3. Daniel Reumann
4. Xiaoyu Zhao
5. Álvaro Fernández-Galiana
6. Mauricio Barahona
7. Molly M. Stevens
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Sep 30, 2025Latest activity Dec 22, 2025
Beyond P-values: A Multi-Metric Framework for Robust Feature Selection and Predictive Modeling

This article has 6 authors:
1. Raelynn Chen
2. Attri Ghosh
3. Jie Hu
4. Yong Chen
5. Jason H. Moore
6. Ruowang Li
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Oct 6, 2025Latest activity Dec 20, 2025
Weakly supervised learning uncovers phenotypic signatures in single-cell data

This article has 5 authors:
1. Anastasia Litinetskaya
2. Soroor Hediyeh-zadeh
3. Amir Ali Moinfar
4. Mohammad Lotfollahi
5. Fabian J. Theis
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Jul 29, 2024Latest activity Dec 20, 2025
Geno-pheno characterization of crop rhizospheres: An integrated Raman spectroscopy and microbiome approach in conventional and organic agriculture

This article has 7 authors:
1. Yejin Son
2. Peisheng He
3. Mathew Baldwin
4. Guangyu Li
5. Zijian Wang
6. April Z. Gu
7. Jenny Kao-Kniffin
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Jun 17, 2025Latest activity Dec 17, 2025
Dynamic protrusions mediate unique crawling motility in Asgard Archaea (Promethearchaeota)

This article has 13 authors:
1. Philipp Radler
2. Tobias Viehboeck
3. Zhen-Hao Luo
4. Nevena Maslać
5. Katharina Schmidt
6. Robert Hauschild
7. Masaru Nobu
8. Silvia Bulgheresi
9. Theresia E.B. Stradal
10. Klemens Rottner
11. Hiroyuki Imachi
12. Michael Sixt
13. Christa Schleper
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Dec 1, 2025Latest activity Dec 11, 2025
The Rhizarian amoeba Filoreta ramosa develops a neuron-like arborized network using conserved cytoskeletal mechanisms

This article has 2 authors:
1. Sarah L. Guest
2. Scott C. Dawson
Reviewed by Arcadia Science

This article has 5 evaluationsAppears in 1 listLatest version Oct 25, 2025Latest activity Dec 11, 2025
RamanOmics Decodes Spatial Vibrational-Molecular Architecture and Rewiring in Aging and Repair

This article has 23 authors:
1. Ke Zhang
2. Xingjian Chen
3. Francesco Monticolo
4. Salvatore Sorrentino
5. Haochun Huang
6. Claire Callahan
7. Yueqing Qiao
8. Judy Zhou
9. Sonia Brodowska
10. Styliani Sapantzi
11. Jianhuan Qi
12. Yinghan Wu
13. Thai Nam Son Dang
14. Francesca Viggiani
15. Chia-Kang Ho
16. Yanxin Xu
17. Koseki J. Kobayashi-Kirschvink
18. Thang Mung
19. Hemali Phatnani
20. Zhixun Dou
21. Jeon Woong Kang
22. Peter T. C. So
23. Jian Shu
Reviewed by Arcadia Science

This article has 14 evaluationsAppears in 1 listLatest version Dec 8, 2025Latest activity Dec 10, 2025
Time-resolved phylogenomics analysis reveals patterns in biosphere nutrient limitation through Earth history

This article has 11 authors:
1. Zhanghan Ni
2. Troy Osborn
3. Juntao Zhong
4. Adrian Gonzalez
5. Will Puzella
6. Aya Klos
7. Bryan Le
8. Alec Leonetti
9. Joanne S Boden
10. Eva E Stueeken
11. Rika E Anderson
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Nov 14, 2025Latest activity Dec 9, 2025
Enhancer-driven random gene overexpression (ERGO): a method to study gene function in Chlamydomonas

This article has 5 authors:
1. Yuliia Lihanova
2. Rory J. Craig
3. Mia Pribbernow
4. Reimund Goss
5. Severin Sasso
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Sep 7, 2025Latest activity Dec 9, 2025
Simulation based-inference of epidemiological and phylodynamic models via Neural Posterior Estimation

This article has 4 authors:
1. Francesco Pinotti
2. Julien Thézé
3. Xavier Bailly
4. Guillaume Fournié
Reviewed by Arcadia Science

This article has 1 evaluationAppears in 1 listLatest version Nov 28, 2025Latest activity Dec 8, 2025
Lipid-Mediated Control of ER Function During Apoptosis

This article has 4 authors:
1. José Luis Garrido-Huarte
2. Josep Fita-Torró
3. Amparo Pascual-Ahuir
4. Markus Proft
Reviewed by Arcadia Science

This article has 2 evaluationsAppears in 1 listLatest version Dec 1, 2025Latest activity Dec 8, 2025
Raman2RNA: Live-cell label-free prediction of single-cell RNA expression profiles by Raman microscopy

This article has 13 authors:
1. Koseki J. Kobayashi-Kirschvink
2. Shreya Gaddam
3. Taylor James-Sorenson
4. Emanuelle Grody
5. Johain R. Ounadjela
6. Baoliang Ge
7. Ke Zhang
8. Jeon Woong Kang
9. Ramnik Xavier
10. Peter T. C. So
11. Tommaso Biancalani
12. Jian Shu
13. Aviv Regev
Reviewed by Arcadia Science

This article has 4 evaluationsAppears in 1 listLatest version Dec 1, 2021Latest activity Jan 2, 2026

Evaluated articles

Generative AI-based design of hybrid transcriptional activator proteins with new DNA-binding specificity

Beyond one-size-fits-all: single-cell transcriptomic signatures predict drug efficacy and reveal responder subgroups in endometriosis

The phylogenetic context for the origin of a unique purple-green photosymbiosis

Ancestral Protein Reconstruction of a membrane trafficking GTPase uncovers unanticipated properties of the ancestral protein and of modern Arf1 GTPases

10,239 whole genomes with multi-omic and clinical health information as the Korean population multi-omic reference dataset

Predictive design of tissue-specific mammalian enhancers that function in vivo in the mouse embryo

ProFam: Open-Source Protein Family Language Modelling for Fitness Prediction and Design

RemoteFoldSet: Benchmarking Structural Awareness of Protein Language Models

Label-free biochemical imaging and timepoint analysis of neural organoids via deep learning-enhanced Raman microspectroscopy

Beyond P-values: A Multi-Metric Framework for Robust Feature Selection and Predictive Modeling

Weakly supervised learning uncovers phenotypic signatures in single-cell data

Geno-pheno characterization of crop rhizospheres: An integrated Raman spectroscopy and microbiome approach in conventional and organic agriculture

Dynamic protrusions mediate unique crawling motility in Asgard Archaea (Promethearchaeota)

The Rhizarian amoeba Filoreta ramosa develops a neuron-like arborized network using conserved cytoskeletal mechanisms

RamanOmics Decodes Spatial Vibrational-Molecular Architecture and Rewiring in Aging and Repair

Time-resolved phylogenomics analysis reveals patterns in biosphere nutrient limitation through Earth history

Enhancer-driven random gene overexpression (ERGO): a method to study gene function in Chlamydomonas

Simulation based-inference of epidemiological and phylodynamic models via Neural Posterior Estimation

Lipid-Mediated Control of ER Function During Apoptosis

Raman2RNA: Live-cell label-free prediction of single-cell RNA expression profiles by Raman microscopy