GigaScience

Latest preprint reviews

1. High-Spatiotemporal-Resolution Nanopore Sequencing of SARS-CoV-2 and Host Cell RNAs

   This article has 10 authors:

   1. Dóra Tombácz
   2. Ákos Dörmő
   3. Gábor Gulyás
   4. Zsolt Csabai
   5. István Prazsák
   6. Balázs Kakuk
   7. Ákos Harangozó
   8. István Jankovics
   9. Béla Dénes
   10. Zsolt Boldogkői

   Reviewed by GigaScience, ScreenIT

2. Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other non-standard architectures in genome assemblies

   This article has 4 authors:

   1. Miguel A. Naranjo-Ortiz
   2. Manu Molina
   3. Verónica Mixão
   4. Toni Gabaldón

   Reviewed by GigaScience

3. A curated human cellular microRNAome based on 196 primary cell types

   This article has 5 authors:

   1. Arun H. Patil
   2. Andrea Baran
   3. Zachary P. Brehm
   4. Matthew N. McCall
   5. Marc K. Halushka

   Reviewed by GigaScience

4. Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize

   This article has 12 authors:

   1. Ravi V. Mural
   2. Guangchao Sun
   3. Marcin Grzybowski
   4. Michael C. Tross
   5. Hongyu Jin
   6. Christine Smith
   7. Linsey Newton
   8. Carson M. Andorf
   9. Margaret R. Woodhouse
   10. Addie M. Thompson
   11. Brandi Sigmon
   12. James C. Schnable

   Reviewed by GigaScience

5. Spacemake: processing and analysis of large-scale spatial transcriptomics data

   This article has 4 authors:

   1. Tamas Ryszard Sztanka-Toth
   2. Marvin Jens
   3. Nikos Karaiskos
   4. Nikolaus Rajewsky

   Reviewed by GigaScience

6. Loop detection using Hi-C data with HiCExplorer

   This article has 3 authors:

   1. Joachim Wolff
   2. Rolf Backofen
   3. Björn Grüning

   Reviewed by GigaScience

7. ChemChaste: Simulating spatially inhomogeneous biochemical reaction–diffusion systems for modeling cell–environment feedbacks

   This article has 3 authors:

   1. Connah G M Johnson
   2. Alexander G Fletcher
   3. Orkun S Soyer

   Reviewed by GigaScience

8. Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus

   This article has 14 authors:

   1. R Alan Harris
   2. Muthuswamy Raveendran
   3. Dustin T Lyfoung
   4. Fritz J Sedlazeck
   5. Medhat Mahmoud
   6. Trent M Prall
   7. Julie A Karl
   8. Harshavardhan Doddapaneni
   9. Qingchang Meng
   10. Yi Han
   11. Donna Muzny
   12. Roger W Wiseman
   13. David H O'Connor
   14. Jeffrey Rogers

   Reviewed by GigaScience, ScreenIT

9. A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae

   This article has 11 authors:

   1. Ziwei Wang
   2. Mathieu Rouard
   3. Manosh Kumar Biswas
   4. Gaetan Droc
   5. Dongli Cui
   6. Nicolas Roux
   7. Franc-Christophe Baurens
   8. Xue-Jun Ge
   9. Trude Schwarzacher
   10. Pat (J S) Heslop-Harrison
   11. Qing Liu

   Reviewed by GigaScience

10. Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification

    This article has 7 authors:

    1. Chakravarthi Kanduri
    2. Milena Pavlović
    3. Lonneke Scheffer
    4. Keshav Motwani
    5. Maria Chernigovskaya
    6. Victor Greiff
    7. Geir K Sandve

    Reviewed by GigaScience