GigaScience

Latest preprint reviews

1. Arteria: An automation system for a sequencing core facility

   This article has 10 authors:

   1. Johan Dahlberg
   2. Johan Hermansson
   3. Steinar Sturlaugsson
   4. Mariya Lysenkova
   5. Patrik Smeds
   6. Claes Ladenvall
   7. Roman Valls Guimera
   8. Florian Reisinger
   9. Oliver Hofmann
   10. Pontus Larsson

   Reviewed by GigaScience

2. Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear ( Pyrus communis L.)

   This article has 22 authors:

   1. Gareth Linsmith
   2. Stephane Rombauts
   3. Sara Montanari
   4. Cecilia H Deng
   5. Jean-Marc Celton
   6. Philippe Guérif
   7. Chang Liu
   8. Rolf Lohaus
   9. Jason D Zurn
   10. Alessandro Cestaro
   11. Nahla V Bassil
   12. Linda V Bakker
   13. Elio Schijlen
   14. Susan E Gardiner
   15. Yves Lespinasse
   16. Charles-Eric Durel
   17. Riccardo Velasco
   18. David B Neale
   19. David Chagné
   20. Yves Van de Peer
   21. Michela Troggio
   22. Luca Bianco

   Reviewed by GigaScience

3. Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

   This article has 10 authors:

   1. Melanie Christine Föll
   2. Lennart Moritz
   3. Thomas Wollmann
   4. Maren Nicole Stillger
   5. Niklas Vockert
   6. Martin Werner
   7. Peter Bronsert
   8. Karl Rohr
   9. Björn Andreas Grüning
   10. Oliver Schilling

   Reviewed by GigaScience

4. Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples

   This article has 4 authors:

   1. Hong Zheng
   2. Kevin Brennan
   3. Mikel Hernaez
   4. Olivier Gevaert

   Reviewed by GigaScience

5. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

   This article has 10 authors:

   1. Hui-Su Kim
   2. Sungwon Jeon
   3. Changjae Kim
   4. Yeon Kyung Kim
   5. Yun Sung Cho
   6. Jungeun Kim
   7. Asta Blazyte
   8. Andrea Manica
   9. Semin Lee
   10. Jong Bhak

   Reviewed by GigaScience

6. GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering

   This article has 7 authors:

   1. Milad Miladi
   2. Eteri Sokhoyan
   3. Torsten Houwaart
   4. Steffen Heyne
   5. Fabrizio Costa
   6. Björn Grüning
   7. Rolf Backofen

   Reviewed by GigaScience

7. DENTIST—using long reads for closing assembly gaps at high accuracy

   This article has 4 authors:

   1. Arne Ludwig
   2. Martin Pippel
   3. Gene Myers
   4. Michael Hiller

   Reviewed by GigaScience

8. Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies

   This article has 2 authors:

   1. Matthew Z DeMaere
   2. Aaron E Darling

   Reviewed by GigaScience

9. Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment

   This article has 5 authors:

   1. Yilei Fu
   2. Medhat Mahmoud
   3. Viginesh Vaibhav Muraliraman
   4. Fritz J Sedlazeck
   5. Todd J Treangen

   Reviewed by GigaScience

10. Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design

    This article has 8 authors:

    1. Lukas M Weber
    2. Ariel A Hippen
    3. Peter F Hickey
    4. Kristofer C Berrett
    5. Jason Gertz
    6. Jennifer Anne Doherty
    7. Casey S Greene
    8. Stephanie C Hicks

    Reviewed by GigaScience