GigaScience

Latest preprint reviews

1. Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects

   This article has 4 authors:

   1. Nathan C. Sheffield
   2. Michał Stolarczyk
   3. Vincent P. Reuter
   4. André F. Rendeiro

   Reviewed by GigaScience

2. To assemble or not to resemble—A validated Comparative Metatranscriptomics Workflow (CoMW)

   This article has 4 authors:

   1. Muhammad Zohaib Anwar
   2. Anders Lanzen
   3. Toke Bang-Andreasen
   4. Carsten Suhr Jacobsen

   Reviewed by GigaScience

3. PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping

   This article has 9 authors:

   1. Luis Francisco Hernández Sánchez
   2. Bram Burger
   3. Carlos Horro
   4. Antonio Fabregat
   5. Stefan Johansson
   6. Pål Rasmus Njølstad
   7. Harald Barsnes
   8. Henning Hermjakob
   9. Marc Vaudel

   Reviewed by GigaScience

4. A Galaxy-based training resource for single-cell RNA-seq quality control and analyses

   This article has 6 authors:

   1. Graham J Etherington
   2. Nicola Soranzo
   3. Suhaib Mohammed
   4. Wilfried Haerty
   5. Robert P Davey
   6. Federica Di Palma

   Reviewed by GigaScience

5. Arteria: An automation system for a sequencing core facility

   This article has 10 authors:

   1. Johan Dahlberg
   2. Johan Hermansson
   3. Steinar Sturlaugsson
   4. Mariya Lysenkova
   5. Patrik Smeds
   6. Claes Ladenvall
   7. Roman Valls Guimera
   8. Florian Reisinger
   9. Oliver Hofmann
   10. Pontus Larsson

   Reviewed by GigaScience

6. Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear ( Pyrus communis L.)

   This article has 22 authors:

   1. Gareth Linsmith
   2. Stephane Rombauts
   3. Sara Montanari
   4. Cecilia H Deng
   5. Jean-Marc Celton
   6. Philippe Guérif
   7. Chang Liu
   8. Rolf Lohaus
   9. Jason D Zurn
   10. Alessandro Cestaro
   11. Nahla V Bassil
   12. Linda V Bakker
   13. Elio Schijlen
   14. Susan E Gardiner
   15. Yves Lespinasse
   16. Charles-Eric Durel
   17. Riccardo Velasco
   18. David B Neale
   19. David Chagné
   20. Yves Van de Peer
   21. Michela Troggio
   22. Luca Bianco

   Reviewed by GigaScience

7. Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

   This article has 10 authors:

   1. Melanie Christine Föll
   2. Lennart Moritz
   3. Thomas Wollmann
   4. Maren Nicole Stillger
   5. Niklas Vockert
   6. Martin Werner
   7. Peter Bronsert
   8. Karl Rohr
   9. Björn Andreas Grüning
   10. Oliver Schilling

   Reviewed by GigaScience

8. Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples

   This article has 4 authors:

   1. Hong Zheng
   2. Kevin Brennan
   3. Mikel Hernaez
   4. Olivier Gevaert

   Reviewed by GigaScience

9. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information

   This article has 10 authors:

   1. Hui-Su Kim
   2. Sungwon Jeon
   3. Changjae Kim
   4. Yeon Kyung Kim
   5. Yun Sung Cho
   6. Jungeun Kim
   7. Asta Blazyte
   8. Andrea Manica
   9. Semin Lee
   10. Jong Bhak

   Reviewed by GigaScience

10. GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering

    This article has 7 authors:

    1. Milad Miladi
    2. Eteri Sokhoyan
    3. Torsten Houwaart
    4. Steffen Heyne
    5. Fabrizio Costa
    6. Björn Grüning
    7. Rolf Backofen

    Reviewed by GigaScience