GigaScience

Latest preprint reviews

1. EssSubgraph improves performance and generalizability of mammalian essential gene prediction with large networks

   This article has 6 authors:

   1. Haimei Wen
   2. Susan Carpenter
   3. Karen McGinnis
   4. Andrew Nelson
   5. Keriayn Smith
   6. Tian Hong

   Reviewed by GigaScience

2. Ultra-deep long-read metagenomics captures diverse taxonomic and biosynthetic potential of soil microbes

   This article has 6 authors:

   1. Caner Bağcı
   2. Timo Negri
   3. Elena Buena Atienza
   4. Caspar Gross
   5. Stephan Ossowski
   6. Nadine Ziemert

   Reviewed by GigaScience

3. TinkerHap - A Novel Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy

   This article has 5 authors:

   1. Uri Hartmann
   2. Eran Shaham
   3. Dafna Nathan
   4. Ilana Blech
   5. Danny Zeevi

   Reviewed by GigaScience

4. GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction

   This article has 3 authors:

   1. Baohua Chen
   2. Dongya Wu
   3. Guojie Zhang

   Reviewed by GigaScience

5. On the path to reference genomes for all biodiversity: lessons learned and laboratory protocols created in the Sanger Tree of Life core laboratory over the first 2000 species

   This article has 18 authors:

   1. Caroline Howard
   2. Amy Denton
   3. Benjamin Jackson
   4. Adam Bates
   5. Jessie Jay
   6. Halyna Yatsenko
   7. Priyanka Sethu Raman
   8. Abitha Thomas
   9. Graeme Oatley
   10. Raquel Vionette do Amaral
   11. Zeynep Ene Göktan
   12. Juan Pablo Narváez Gómez
   13. Isabelle Clayton Lucey
   14. Elizabeth Sinclair
   15. Michael A. Quail
   16. Mark Blaxter
   17. Kerstin Howe
   18. Mara K. N. Lawniczak

   Reviewed by GigaScience

6. Improving the Reliability and Quality of Nextflow Pipelines with nf-test

   This article has 2 authors:

   1. Lukas Forer
   2. Sebastian Schoenherr

   Reviewed by GigaScience

7. CryoDataBot: a pipeline to curate cryoEM datasets for AI-driven structural biology

   This article has 8 authors:

   1. Qibo Xu
   2. Leon Wu
   3. Michael Rebelo
   4. Shi Feng
   5. Xinye Yu
   6. Farhanaz Farheen
   7. Daisuke Kihara
   8. Z. Hong Zhou

   Reviewed by GigaScience

8. The enduring advantages of the SLOW5 file format for raw nanopore sequencing data

   This article has 5 authors:

   1. Hasindu Gamaarachchi
   2. Sasha Jenner
   3. Hiruna Samarakoon
   4. James M. Ferguson
   5. Ira W. Deveson

   Reviewed by GigaScience

9. Reproducible processing of TCGA regulatory networks

   This article has 10 authors:

   1. Viola Fanfani
   2. Katherine H. Shutta
   3. Panagiotis Mandros
   4. Jonas Fischer
   5. Enakshi Saha
   6. Soel Micheletti
   7. Chen Chen
   8. Marouen Ben Guebila
   9. Camila M. Lopes-Ramos
   10. John Quackenbush

   Reviewed by GigaScience

10. GTestimate: Improving relative gene expression estimation in scRNA-seq using the Good-Turing estimator

    This article has 3 authors:

    1. Martin Fahrenberger
    2. Christopher Esk
    3. Arndt von Haeseler

    Reviewed by GigaScience