GigaScience

Latest preprint reviews

1. SeuratExtend: Streamlining Single-Cell RNA-Seq Analysis Through an Integrated and Intuitive Framework

   This article has 4 authors:

   1. Yichao Hua
   2. Linqian Weng
   3. Fang Zhao
   4. Florian Rambow

   Reviewed by GigaScience

2. Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot

   This article has 11 authors:

   1. Oscar Aramburu
   2. Belén Gómez-Pardo
   3. Paula Rodríguez-Villamayor
   4. Andrés Blanco-Hortas
   5. Jesús Lamas
   6. Pooran Dewari
   7. Diego Perojil-Morata
   8. Pierre Boudinot
   9. Daniel J. Macqueen
   10. Carmen Bouza
   11. Paulino Martínez

   Reviewed by GigaScience

3. CellBinDB: A Large-Scale Multimodal Annotated Dataset for Cell Segmentation with Benchmarking of Universal Models

   This article has 13 authors:

   1. Can Shi
   2. Jinghong Fan
   3. Zhonghan Deng
   4. Huanlin Liu
   5. Qiang Kang
   6. Yumei Li
   7. Jing Guo
   8. Jingwen Wang
   9. Jinjiang Gong
   10. Sha Liao
   11. Ao Chen
   12. Ying Zhang
   13. Mei Li

   Reviewed by GigaScience

4. Extraction of biological terms using large language models enhances the usability of metadata in the BioSample database

   This article has 8 authors:

   1. Shuya Ikeda
   2. Zhaonan Zou
   3. Hidemasa Bono
   4. Yuki Moriya
   5. Shuichi Kawashima
   6. Toshiaki Katayama
   7. Shinya Oki
   8. Tazro Ohta

   Reviewed by GigaScience

5. The FIP 1.0 Data Set: Highly Resolved Annotated Image Time Series of 4,000 Wheat Plots Grown in Six Years

   This article has 28 authors:

   1. Lukas Roth
   2. Mike Boss
   3. Norbert Kirchgessner
   4. Helge Aasen
   5. Brenda Patricia Aguirre-Cuellar
   6. Price Pius Atuah Akiina
   7. Jonas Anderegg
   8. Joaquin Gajardo Castillo
   9. Xiaoran Chen
   10. Simon Corrado
   11. Krzysztof Cybulski
   12. Beat Keller
   13. Stefan Göbel Kortstee
   14. Lukas Kronenberg
   15. Frank Liebisch
   16. Paraskevi Nousi
   17. Corina Oppliger
   18. Gregor Perich
   19. Johannes Pfeifer
   20. Kang Yu
   21. Nicola Storni
   22. Flavian Tschurr
   23. Simon Treier
   24. Michele Volpi
   25. Hansueli Zellweger
   26. Olivia Zumsteg
   27. Andreas Hund
   28. Achim Walter

   Reviewed by GigaScience

6. CODARFE: Unlocking the prediction of continuous environmental variables based on microbiome

   This article has 5 authors:

   1. Murilo Caminotto Barbosa
   2. João Fernando Marques da Silva
   3. Leonardo Cardoso Alves
   4. Robert D Finn
   5. Alexandre Rossi Paschoal

   Reviewed by GigaScience

7. Chromosome-level genome assembly and methylome profile enables insights for the conservation of endangered loggerhead sea turtles

   This article has 10 authors:

   1. Eugenie C. Yen
   2. James D. Gilbert
   3. Alice Balard
   4. Albert Taxonera
   5. Kirsten Fairweather
   6. Heather L. Ford
   7. Doko-Miles J. Thorburn
   8. Stephen J. Rossiter
   9. José M. Martín-Durán
   10. Christophe Eizaguirre

   Reviewed by GigaScience

8. Health Data Nexus: an open data platform for AI research and education in medicine

   This article has 12 authors:

   1. January Adams
   2. Rafal Cymerys
   3. Karol Szuster
   4. Daniel Hekman
   5. Zoryana Salo
   6. Rutvik Solanki
   7. Muhammad Mamdani
   8. Alistair Johnson
   9. Katarzyna Ryniak
   10. Tom Pollard
   11. David Rotenberg
   12. Benjamin Haibe-Kains

   Reviewed by GigaScience

9. Chromosome-level reference genome for the medically important Arabian horned viper ( Cerastes gasperettii )

   This article has 15 authors:

   1. Gabriel Mochales-Riaño
   2. Samuel R. Hirst
   3. Adrián Talavera
   4. Bernat Burriel-Carranza
   5. Viviana Pagone
   6. Maria Estarellas
   7. Theo Busschau
   8. Stéphane Boissinot
   9. Michael P. Hogan
   10. Jordi Tena-Garcés
   11. Davinia Pla
   12. Juan J. Calvete
   13. Johannes Els
   14. Mark J. Margres
   15. Salvador Carranza

   Reviewed by GigaScience

10. Analysis-ready VCF at Biobank scale using Zarr

    This article has 16 authors:

    1. Eric Czech
    2. Timothy R. Millar
    3. Will Tyler
    4. Tom White
    5. Benjamin Elsworth
    6. Jérémy Guez
    7. Jonny Hancox
    8. Ben Jeffery
    9. Konrad J. Karczewski
    10. Alistair Miles
    11. Sam Tallman
    12. Per Unneberg
    13. Rafal Wojdyla
    14. Shadi Zabad
    15. Jeff Hammerbacher
    16. Jerome Kelleher

    Reviewed by GigaScience