GigaScience

Latest preprint reviews

1. Enhanced semantic classification of microbiome sample origins using Large Language Models (LLMs)

   This article has 7 authors:

   1. Daniela Gaio
   2. Janko Tackmann
   3. Eugenio Perez-Molphe-Montoya
   4. Nicolas Näpflin
   5. David Patsch
   6. Lukas Malfertheiner
   7. Christian von Mering

   Reviewed by GigaScience

2. Improved genome assembly of whale shark, the world’s biggest fish: revealing “chromocline” in intragenomic heterogeneity

   This article has 3 authors:

   1. Yawako W. Kawaguchi
   2. Rui Matsumoto
   3. Shigehiro Kuraku

   Reviewed by GigaScience

3. Single-nucleus multiple-organ chromatin accessibility mapping in the rat

   This article has 9 authors:

   1. Ronghai Li
   2. Yue Yuan
   3. Shanshan Duan
   4. Qiuting Deng
   5. Wen Ma
   6. Chang Liu
   7. Peng Gao
   8. Li Lu
   9. Chuanyu Liu

   Reviewed by GigaScience

4. An Interpretable Graph-Regularized Optimal Transport Framework for Diagonal Single-Cell Integrative Analysis

   This article has 7 authors:

   1. Zexuan Wang
   2. Qipeng Zhan
   3. Shu Yang
   4. Zhuoping Zhou
   5. Mengyuan Kan
   6. Tianhuan Zhai
   7. Li Shen

   Reviewed by GigaScience

5. Expression-Driven Genetic Dependency Reveals Targets for Precision Medicine

   This article has 9 authors:

   1. Abdulkadir Elmas
   2. Hillary M. Layden
   3. Jacob D. Ellis
   4. Luke N. Bartlett
   5. Xian Zhao
   6. Reika Kawabata-Iwakawa
   7. Hideru Obinata
   8. Scott W. Hiebert
   9. Kuan-lin Huang

   Reviewed by GigaScience

6. Federated Knowledge Retrieval Elevates Large Language Model Performance on Biomedical Benchmarks

   This article has 2 authors:

   1. Janet Joy
   2. Andrew I. Su

   Reviewed by GigaScience

7. SpaceBF: Spatial coexpression analysis using Bayesian Fused approaches in spatial omics datasets

   This article has 2 authors:

   1. Souvik Seal
   2. Brian Neelon

   Reviewed by GigaScience

8. nf-core/proteinfamilies: A scalable pipeline for the generation of protein families

   This article has 13 authors:

   1. Evangelos Karatzas
   2. Martin Beracochea
   3. Fotis A. Baltoumas
   4. Eleni Aplakidou
   5. Lorna Richardson
   6. James A. Fellows Yates
   7. Daniel Lundin
   8. nf-core community
   9. Aydin Buluç
   10. Nikos C. Kyrpides
   11. Ilias Georgakopoulos-Soares
   12. Georgios A. Pavlopoulos
   13. Robert D. Finn

   Reviewed by GigaScience

9. Comparative evaluation of computational methods for reconstruction of human viral genomes

   This article has 7 authors:

   1. Maria J. P. Sousa
   2. Mari Toppinen
   3. Lari Pyöriä
   4. Klaus Hedman
   5. Antti Sajantila
   6. Maria F. Perdomo
   7. Diogo Pratas

   Reviewed by GigaScience

10. Haplotype-resolved chromosome-level genome assemblies of four Diamesa species reveal the genetic basis of cold tolerance and high-altitude adaptations in arctic chironomids

    This article has 12 authors:

    1. Sarah L.F. Martin
    2. Renato La Torre
    3. Bram Danneels
    4. Ave Tooming-Klunderud
    5. Morten Skage
    6. Spyridon Kollias
    7. Ole Kristian Tørresen
    8. Mohsen Falahati Anbaran
    9. Elisabeth Stur
    10. Kjetill S. Jakobsen
    11. Michael D. Martin
    12. Torbjørn Ekrem

    Reviewed by GigaScience