Evaluated articles

Integer programming framework for pangenome-based genome inference

1. Ghanshyam Chandra
2. Md Helal Hossen
3. Stephan Scholz
4. Alexander T Dilthey
5. Daniel Gibney
6. Chirag Jain

Reviewed by Arcadia Science

Secreted phospholipase PLA2G12A-driven lysophospholipid signaling via lipolytic modification of extracellular vesicles facilitates pathogenic Th17 differentiation

1. Chika Mochizuki
2. Yoshitaka Taketomi
3. Atsushi Irie
4. Kuniyuki Kano
5. Yuki Nagasaki
6. Yoshimi Miki
7. Takashi Ono
8. Yasumasa Nishito
9. Takahiro Nakajima
10. Yuri Tomabechi
11. Kazuharu Hanada
12. Mikako Shirouzu
13. Takashi Watanabe
14. Kosuke Hata
15. Yoshihiro Izumi
16. Takeshi Bamba
17. Jerold Chun
18. Kai Kudo
19. Ai Kotani
20. Yusuke Endo
21. Junken Aoki
22. Makoto Murakami

Reviewed by Arcadia Science

Raman flow cytometry using time-delay integration

1. Matthew Lindley
2. Toshiki Kubo
3. Stéphanie Devineau
4. Menglu Li
5. Jing Qiao
6. Takuya Yashiro
7. Shiroh Iwanaga
8. Kazuyo Moro
9. Katsumasa Fujita

Reviewed by Arcadia Science

A generalist microbial predator shows innate attraction to more profitable prey, but does not learn from experience

1. P. M. Shreenidhi
2. Rachel I. McCabe
3. Heng Liang
4. Margaret I. Steele
5. David C. Queller
6. Joan E. Strassmann

Reviewed by Arcadia Science

Applied tutorial for the design and fabrication of biomicrofluidic devices by resin 3D printing

1. Hannah.B. Musgrove
2. Megan.A. Catterton
3. Rebecca.R. Pompano

Reviewed by Arcadia Science

Evaluation of machine learning-assisted directed evolution across diverse combinatorial landscapes

1. Francesca-Zhoufan Li
2. Jason Yang
3. Kadina E. Johnston
4. Emre Gürsoy
5. Yisong Yue
6. Frances H. Arnold

Reviewed by Arcadia Science

Biophysical limits of ultrafast cellular motility

1. Ray Chang
2. Manu Prakash

Reviewed by Arcadia Science

Genetic Predisposition Toward Multicellularity in Chlamydomonas reinhardtii

1. I Chen Kimberly Chen
2. Shania Khatri
3. Matthew D Herron
4. Frank Rosenzweig

Reviewed by Arcadia Science

BioFunctional: A Comprehensive App for Interpreting and Visualizing Functional Analysis of KEGG Pathways and Gene Ontologies

1. Alejandro Rodriguez
2. Antonio Monleon Getino

Reviewed by Arcadia Science

FLIMPA: A Versatile Software for Fluorescence Lifetime Imaging Microscopy Phasor Analysis

1. Sofia Kapsiani
2. Nino F. Läubli
3. Edward N. Ward
4. Mona Shehata
5. Clemens F. Kaminski
6. Gabriele S. Kaminski Schierle

Reviewed by Arcadia Science

Establishing the green algae Chlamydomonas incerta as a platform for recombinant protein production

1. Kalisa Kang
2. Évellin do Espirito Santo
3. Crisandra Jade Diaz
4. Aaron Oliver
5. Lisa Saxton
6. Lauren May
7. Stephen Mayfield
8. João Vitor Dutra Molino

Reviewed by Arcadia Science

Generative Models Validation via Manifold Recapitulation Analysis

1. Nicolo’ Lazzaro
2. Gianluca Leonardi
3. Raffaele Marchesi
4. Massimiliano Datres
5. Anna Saiani
6. Jacopo Tessadori
7. Alejandro Granados
8. Johan Henriksson
9. Marco Chierici
10. Giuseppe Jurman
11. Toma Tebaldi
12. Gabriele Sales

Reviewed by Arcadia Science

Multi-color fluorescence live-cell imaging in Dictyostelium discoideum

1. Hidenori Hashimura
2. Satoshi Kuwana
3. Hibiki Nakagwa
4. Kenichi Abe
5. Tomoko Adachi
6. Toyoko Sugita
7. Shoko Fujishiro
8. Gen Honda
9. Satoshi Sawai

Reviewed by Arcadia Science

Phosphorylation-Regulated Conformational Diversity and Topological Dynamics of an Intrinsically Disordered Nuclear Receptor

1. Vasily Akulov
2. Alba Jiménez Panizo
3. Eva Estébanez-Perpiñá
4. John van Noort
5. Alireza Mashaghi

Reviewed by Arcadia Science

InteracTor: A new integrative feature extraction toolkit for improved characterization of protein structural properties

1. Jose Cleydson F. Silva
2. Layla Schuster
3. Nick Sexson
4. Matias Kirst
5. Marcio F. R. Resende
6. Raquel Dias

Reviewed by Arcadia Science

Evaluation of tick salivary and midgut extracellular vesicles as anti-tick vaccines in White-tailed deer (Odocoileus virginianus)

1. Julia Gonzalez
2. Cristina Harvey
3. Cárita de Souza Ribeiro-Silva
4. Brenda Leal-Galvan
5. Kelly A. Persinger
6. Pia U. Olafson
7. Tammi L. Johnson
8. Adela Oliva Chavez

Reviewed by Arcadia Science

Unveiling the functional connectivity of astrocytic networks with AstroNet, a graph reconstruction algorithm coupled to image processing

1. L. Zonca
2. F. C. Bellier
3. G. Milior
4. P. Aymard
5. J. Visser
6. A. Rancillac
7. N. Rouach
8. D. Holcman

Reviewed by Arcadia Science

Trim7 does not have a role in the restriction of murine norovirus infection in vivo

1. Mridula Annaswamy Srinivas
2. Linley R. Pierce
3. Mikayla C. Olson
4. Shelly J. Roberston
5. Gail L. Sturdevant
6. Sonja M. Best
7. Robert C. Orchard

Reviewed by Arcadia Science

Mast cells promote pathology and susceptibility in tuberculosis

1. Ananya Gupta
2. Vibha Taneja
3. Javier Rangel Moreno
4. Nilofer Naqvi
5. Abhimanyu
6. Yun Tao
7. Mushtaq Ahmed
8. Kuldeep S Chauhan
9. Daniela Trejo-Ponce de León
10. Gustavo Ramírez-Martínez
11. Luis Jiménez-Alvarez
12. Cesar Luna-Rivero
13. Joaquin Zuniga
14. Deepak Kaushal
15. Shabaana A Khader

• Curated by eLife

  eLife Assessment

  In this useful study, the authors utilize published scRNA-seq data to highlight the potential importance of mast cells (MCs) in TB granulomas, presenting a solid comparative assessment of chymase- and tryptase-expressing MCs in the lungs of Mycobacterium tuberculosis-infected individuals and non-human primates. While the authors appropriately discussed the inconsistencies across models, adoptive transfer experiments in MC-deficient mice would substantially strengthen the causal link between MCs and TB outcomes, providing more direct functional validation of the proposed role of MCs in TB pathogenesis.

Reviewed by eLife, Arcadia Science

Population genomics reveals strong impacts of genetic drift without purging and guides conservation of bull and giant kelp

1. Jordan B. Bemmels
2. Samuel Starko
3. Brooke L. Weigel
4. Kaede Hirabayashi
5. Alex Pinch
6. Cassandra Elphinstone
7. Megan N. Dethier
8. Loren H. Rieseberg
9. Jonathan E. Page
10. Christopher J. Neufeld
11. Gregory L. Owens

Reviewed by Arcadia Science