eLife

Latest preprint reviews

1. Verbal Episodic Processing in Newborns

   This article has 4 authors:

   1. Emma Visibelli
   2. Ana Fló
   3. Eugenio Baraldi
   4. Silvia Benavides-Varela

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This fundamental study reports convincing evidence for early verbal episodic memory formation. The findings demonstrate that speaker identity is a crucial feature, enabling episodic-like memories from birth, and will be of interest to cognitive neuroscientists working on brain development, memory, language learning and social cognition.

   Reviewed by eLife

2. Spectral decomposition of local field potentials uncovers frequency-tuned gain modulation of working memory in primate visual system

   This article has 5 authors:

   1. Majid Roshanaei
   2. Mohammad Reza Daliri
   3. Zahra Bahmani
   4. Kelsey Clark
   5. Behrad Noudoost

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This study offers a valuable contribution to understanding how working memory (WM) shapes neural processing in extrastriate cortex. By applying spectral decomposition to LFP recordings from primate middle temporal area (MT) during a spatial WM task, the authors show that lower-frequency components (theta, alpha, and beta, but not gamma or high-gamma) correlate with trial-by-trial gain modulation of visually evoked responses. However, certain aspects of the gain-modulation and statistical analyses are incomplete. A clearer and more comprehensive description of these components would substantially strengthen the manuscript.

   Reviewed by eLife

3. Complementary vertebrate Wac models exhibit phenotypes relevant to DeSanto-Shinawi Syndrome

   This article has 24 authors:

   1. Kang-Han Lee
   2. April M Stafford
   3. Maria Pacheco-Vergara
   4. Karol Cichewicz
   5. Cesar P Canales
   6. Nicolas Seban
   7. Melissa Corea
   8. Darlene Rahbarian
   9. Kelly E Bonekamp
   10. Grant R Gillie
   11. Dariangelly Pacheco-Cruz
   12. Alyssa M Gill
   13. Hye-Eun Hwang
   14. Yeong-Eun Kim
   15. Katie L Uhl
   16. Tara E Jager
   17. Marwan Shinawi
   18. Xiaopeng Li
   19. Andre Obenaus
   20. Shane R Crandall
   21. Juhee Jeong
   22. Alex Nord
   23. Cheol-Hee Kim
   24. Daniel Vogt

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This important study establishes the first vertebrate models of DeSanto-Shinawi Syndrome, revealing conserved craniofacial and social and behavioral phenotypes across mouse and zebrafish that mirror key clinical features. The convincing evidence is supported by behavioral, anatomical, and molecular analyses of Wac animal mutants. This study sets a baseline for future mechanistic studies and reports a platform to test approaches to reverse phenotypes.

   Reviewed by eLife

4. A simplified and highly efficient cell-free protein synthesis system for prokaryotes

   This article has 5 authors:

   1. Xianshengjie Lang
   2. Changbin Zhang
   3. Jingxuan Lin
   4. Zhe Zhang
   5. Wenfei Li

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     The study presents valuable findings of a new E. coli cell-free protein synthesis (eCFPS) system that has been simplified by reducing the number of core components from 35 to 7; furthermore, the findings communicate a simplified 'fast lysate' preparation that eliminates the need for traditional runoff and dialysis steps. It is interesting that the system's robustness is exhibited by its applicability to nanoluc, a protein that expresses readily in many systems, to more challenging proteins like the functional self-assembling vimentin and the active restriction endonuclease Bsal. Despite the study representing an advancement towards simplifying protein expression workflows, the evidence is solid and supports the main claims however minor weakness exists i.e. the efficiency claims about the new system needs to be supported by accurate comparisons with typical cell free expression systems, in addition, investigations into the mechanistic basis of the observations would provide more evidence. Despite this shortcoming, the paper remains of interest to scientists in cell and molecular biology, microbiology, biotechnology and protein synthesis.

   Reviewed by eLife

5. A retrospective analysis of 400 publications reveals patterns of irreproducibility across an entire life sciences research field

   This article has 12 authors:

   1. Joseph Lemaitre
   2. Désirée Popelka
   3. Blandine Ribotta
   4. Hannah Westlake
   5. Sveta Chakrabarti
   6. Li Xiaoxue
   7. Mark A Hanson
   8. Haobo Jiang
   9. Francesca Di Cara
   10. Estee Kurant
   11. Fabrice David
   12. Bruno Lemaitre

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This important study presents an impressive large-scale effort to assess the reproducibility of published findings in the field of Drosophila immunity. The authors analyse 400 papers published between 1959 and 2011, and assess how many of the claims in these papers have been tested in subsequent publications. In a companion article they report the results of experiments to test a subset of the claims that, according to the literature, have not been tested. The present article also explores if various factors related to authors, institutions and journals influence reproducibility in this field. The evidence supporting the claims is solid, but there is considerable scope for strengthening and extending the analysis. The limitations inherent to evaluating reproducibility based on the published literature should also be acknowledged.

   Reviewed by eLife

6. Defining the chromatin-associated protein landscapes on Trypanosoma brucei repetitive elements using synthetic TALE proteins

   This article has 8 authors:

   1. Roberta Carloni
   2. Tadhg Devlin
   3. Pin Tong
   4. Christos Spanos
   5. Tanya Auchynnikava
   6. Juri Rappsilber
   7. Keith R Matthews
   8. Robin C Allshire

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This work significantly advances our understanding of chromatin organization within regions of repetitive sequences in the parasitic protozoan Trypanosoma brucei. Using cutting edge interdisciplinary tools, the authors provide compelling evidence for two discrete types of repetitive DNA element-associated proteins- one set involved in essential centromere function; and, the other involved in glycoprotein antigenic variation via homologous recombination. Thus, these fundamental findings have implications for this parasite's biology, and for therapeutic targeting in kinetoplastid diseases. This work will be exciting to those in the centromere/mitosis and parasite immunity fields.

     [Editors' note: this paper was reviewed by Review Commons.]

   Reviewed by eLife, Review Commons

7. Microbiota impact Drosophila ageing via Acetobacter, Tachykinin, and TkR99D

   This article has 7 authors:

   1. Diana Marcu
   2. David R Sannino
   3. Anthony J Dornan
   4. Rita Ibrahim
   5. Atharv Kapoor
   6. Miriam Wood
   7. Adam J Dobson

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This important study demonstrates that in Drosophila melanogaster, tachykinin (Tk) expression is regulated by the microbiota. The authors present convincing evidence that axenic flies raised with no microbiota are longer-lived than conventionally reared animals, and that Tk expression and Tk receptors in the nervous system are required for this effect. They further test individual bacterial strains for their role in these effects and connect the effect to loss of lipid stores and suggest that FOXO may be involved in the phenotype, results that are of interest to the fields of environmental perception, host microbiome interactions, and geroscience.

     [Editors' note: this paper was reviewed by Review Commons.]

   Reviewed by eLife, Review Commons

8. The FAM53C/DYRK1A axis regulates the G1/S transition of the cell cycle

   This article has 15 authors:

   1. Taylar Hammond
   2. Jong Bin Choi
   3. Miles W Membreño
   4. Janos Demeter
   5. Roy Ng
   6. Debadrita Bhattacharya
   7. Thuyen N Nguyen
   8. Griffin G Hartmann
   9. Caterina I Colon
   10. Carine Bossard
   11. Jan M Skotheim
   12. Peter K Jackson
   13. Anca M Pasca
   14. Seth M Rubin
   15. Julien Sage

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This study identifies the uncharacterised protein FAM53C as a novel, potential regulator of the G1/S cell cycle transition, linking its function to the DYRK1A kinase and the RB/p53 pathways. The work is valuable and of interest to the cell cycle field, leveraging a strong computational screen to identify a new candidate. The findings are solid, although confidence in the siRNA depletion phenotypes would have been higher with rescue experiments using an siRNA-resistant cDNA.

     [Editors' note: this paper was reviewed by Review Commons.]

   Reviewed by eLife, Review Commons

9. Non-canonical amino acid incorporation enables minimally disruptive labeling of stress granule and TDP-43 proteinopathy

   This article has 7 authors:

   1. Hao Chen
   2. Haocheng Wang
   3. Yu-Ning Lu
   4. Peng Chen
   5. Zhongfan Zheng
   6. Tao Zhang
   7. Jiou Wang

   This article has been curated by 1 group:

   • Curated by eLife

     eLife Assessment

     This paper demonstrates that a genetic code expansion to tag two amyotrophic lateral sclerosis (ALS) proteins associated with stress granules is useful in an experimental context. The data are solid and demonstrate the feasibility of using ANAP-fluorescence for live cell imaging.

   Reviewed by eLife

10. Adaptation of endothelial cells to microenvironment topographical cues through lysyl oxidase like-2-mediated basement membrane scaffolding

    This article has 17 authors:

    1. Marion F Marchand
    2. Noémie Brassard-Jollive
    3. Claire Leclech
    4. Jorge Barrasa-Fano
    5. Yoann Atlas
    6. Claudia Umana-Diaz
    7. Apeksha Shapeti
    8. Corinne Ardidie-Robouant
    9. Tristan Piolot
    10. Sabrina Martin
    11. Philippe Mailly
    12. Christophe Guilluy
    13. Abdul I Bakarat
    14. Catherine Monnot
    15. Hans Van Oosterwyck
    16. Stéphane Germain
    17. Laurent Muller

    This article has been curated by 1 group:

    • Curated by eLife

      eLife Assessment

      This study presents important findings describing the early assembly of vascular basement membrane and how vascular cells switch from responding to cues provided by the external environment to those provided by self-assembled basement membrane. The evidence supporting the claims of the authors is convincing, with state-of-the-art microscopy and several different culture conditions examined. The work will be of interest to cell biologists studying the ECM, vascular development, as well as medical scientists focused on diseases that depend on vascular growth.

    Reviewed by eLife