Molecular Biology

A BioID-Derived Proximity Interactome for SARS-CoV-2 Proteins

1. Danielle G. May
2. Laura Martin-Sancho
3. Valesca Anschau
4. Sophie Liu
5. Rachel J. Chrisopulos
6. Kelsey L. Scott
7. Charles T. Halfmann
8. Ramon Díaz Peña
9. Dexter Pratt
10. Alexandre R. Campos
11. Kyle J. Roux

Reviewed by ScreenIT

Local chromatin fiber folding represses transcription and loop extrusion in quiescent cells

1. Sarah G Swygert
2. Dejun Lin
3. Stephanie Portillo-Ledesma
4. Po-Yen Lin
5. Dakota R Hunt
6. Cheng-Fu Kao
7. Tamar Schlick
8. William S Noble
9. Toshio Tsukiyama

• Curated by eLife

  Evaluation Summary:

  This work characterizes chromatin compaction in quiescent yeast cells and its role in the repression of gene expression. The authors' findings that chromatin compaction via heterogeneous interactions between nucleosomes directly contributes to transcriptional repression provides a useful conceptual paradigm for studies of quiescence in other organisms.

  (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #2 agreed to share their name with the authors.)

Reviewed by eLife

Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2

1. Laura Arribas-Hernández
2. Sarah Rennie
3. Tino Köster
4. Carlotta Porcelli
5. Martin Lewinski
6. Dorothee Staiger
7. Robin Andersson
8. Peter Brodersen

• Curated by eLife

  Evaluation Summary:

  Gene regulation triggered by recognising N6-methyladenosine (m6A) by RNA-binding proteins emerged as a fundamental process for development and adaptation in most eukaryotes. This paper is of interest to scientists within the field of post-transcriptional gene regulation and RNA biology. In a deep and thorough analysis, the authors resolved previously contradictory reports of sequence motifs associated with methylation sites in messenger RNAs and shed light on the proteins that recognise this modification.

  (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #1 and Reviewer #2 agreed to share their names with the authors.)

  This manuscript was co-submitted with: https://www.biorxiv.org/content/10.1101/2021.08.01.454660v1

Reviewed by eLife

The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation

1. Laura Arribas-Hernández
2. Sarah Rennie
3. Michael Schon
4. Carlotta Porcelli
5. Balaji Enugutti
6. Robin Andersson
7. Michael D Nodine
8. Peter Brodersen

• Curated by eLife

  Evaluation Summary:

  Post-transcriptional gene regulation mediated by YTH proteins that bind N6-methyladenosine (m6A) in mRNA is a pathway that has emerged of importance in eukaryotic biology. This paper focuses on two evolutionarily close proteins of this family, ETC2 and ETC3 to find redundant, specific and divergent functions. The authors addressed previously contradictory reports regarding the subcellular location of these proteins. The paper is of general interest to scientists within the field of post-transcriptional gene regulation and RNA biology and is not limited to the plant research community. This will advance our understanding of mRNA methylation and its role in plant biology.

  (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #1 and Reviewer #2 agreed to share their names with the authors.)

  This manuscript was co-submitted with: https://www.biorxiv.org/content/10.1101/2021.04.18.440342v2

Reviewed by eLife

The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression

1. Lucija Bujanic
2. Olga Shevchuk
3. Nicolai von Kügelgen
4. Anna Kalinina
5. Katarzyna Ludwik
6. David Koppstein
7. Nadja Zerna
8. Albert Sickmann
9. Marina Chekulaeva

Reviewed by ScreenIT

METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance

1. Eriko Matsuura-Suzuki
2. Tadahiro Shimazu
3. Mari Takahashi
4. Kaoru Kotoshiba
5. Takehiro Suzuki
6. Kazuhiro Kashiwagi
7. Yoshihiro Sohtome
8. Mai Akakabe
9. Mikiko Sodeoka
10. Naoshi Dohmae
11. Takuhiro Ito
12. Yoichi Shinkai
13. Shintaro Iwasaki

• Curated by eLife

  Evaluation Summary:

  This work examines how METTLL18-mediated RPL3 histidine methylation on 245 position regulates translation elongation and protects cells from cellular aggregation of Tyr-rich proteins. The study hints at the existence of a "ribosome code" and how posttranslational modification of ribosomal proteins could affect translation.

  (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #1 and Reviewer #3 agreed to share their names with the authors.)

Reviewed by eLife

Clinical grade ACE2 as a universal agent to block SARS-CoV-2 variants

1. Gerald Wirnsberger
2. Vanessa Monteil
3. Brett Eaton
4. Elena Postnikova
5. Michael Murphy
6. Benedict Braunsfeld
7. Ian Crozier
8. Franz Kricek
9. Janine Niederhöfer
10. Alice Schwarzböck
11. Helene Breid
12. Anna Sanchez Jimenez
13. Agnes Bugajska-Schretter
14. Alexander Dohnal
15. Christine Ruf
16. Romana Gugenberger
17. Astrid Hagelkruys
18. Nuria Montserrat
19. Michael R. Holbrook
20. Chris Oostenbrink
21. Robert H. Shoemaker
22. Ali Mirazimi
23. Josef M. Penninger

Reviewed by ScreenIT

A virus‐derived microRNA targets immune response genes during SARS‐CoV‐2 infection

1. Meetali Singh
2. Maxime Chazal
3. Piergiuseppe Quarato
4. Loan Bourdon
5. Christophe Malabat
6. Thomas Vallet
7. Marco Vignuzzi
8. Sylvie van der Werf
9. Sylvie Behillil
10. Flora Donati
11. Nathalie Sauvonnet
12. Giulia Nigro
13. Maryline Bourgine
14. Nolwenn Jouvenet
15. Germano Cecere

Reviewed by PREreview, ScreenIT

Targeting stem-loop 1 of the SARS-CoV-2 5′ UTR to suppress viral translation and Nsp1 evasion

1. Setu M. Vora
2. Pietro Fontana
3. Tianyang Mao
4. Valerie Leger
5. Ying Zhang
6. Tian-Min Fu
7. Judy Lieberman
8. Lee Gehrke
9. Ming Shi
10. Longfei Wang
11. Akiko Iwasaki
12. Hao Wu

Reviewed by ScreenIT

Network analysis outlines strengths and weaknesses of emerging SARS-CoV-2 Spike variants

1. P.D. Manrique
2. S. Chakraborty
3. K. Nguyen
4. R. Mansbach
5. B. Korber
6. S. Gnanakaran

Reviewed by ScreenIT