Molecular Biology

RNA Polymerase II transcription independent of TBP in murine embryonic stem cells

1. James ZJ Kwan
2. Thomas F Nguyen
3. Anuli C Uzozie
4. Marek A Budzynski
5. Jieying Cui
6. Joseph MC Lee
7. Filip Van Petegem
8. Philipp F Lange
9. Sheila S Teves

• Curated by eLife

  eLife assessment

  This important study employs auxin-induced degradation to show that the TATA-binding protein (TBP) is not required for ongoing RNA polymerase II transcription nor heat-shock or retinoic acid-induced transcription, but that TBP is essential for RNA polymerase III transcription, with TBP-independent TFIID complexes being assembled and present at the transcription start sites of polymerase II-transcribed promoters. The evidence for the major claims is currently incomplete.

Reviewed by eLife

Subcytoplasmic location of translation controls protein output

1. Ellen L. Horste
2. Mervin M. Fansler
3. Ting Cai
4. Xiuzhen Chen
5. Sibylle Mitschka
6. Gang Zhen
7. Flora C.Y. Lee
8. Jernej Ule
9. Christine Mayr

Reviewed by Life Science Editors Foundation

Rapid and sensitive detection of native glycoRNAs

1. Helena Hemberger
2. Peiyuan Chai
3. Charlotta G. Lebedenko
4. Reese M. Caldwell
5. Benson M. George
6. Ryan A. Flynn

Reviewed by Arcadia Science

Integrating analog and digital modes of gene expression at Arabidopsis FLC

1. Rea L Antoniou-Kourounioti
2. Anis Meschichi
3. Svenja Reeck
4. Scott Berry
5. Govind Menon
6. Yusheng Zhao
7. John Fozard
8. Terri Holmes
9. Lihua Zhao
10. Huamei Wang
11. Matthew Hartley
12. Caroline Dean
13. Stefanie Rosa
14. Martin Howard

• Curated by eLife

  eLife assessment

  Regulation of gene expression in many biological systems occurs either through a binary mode where gene expression is either on or off (digital regulation), or through an analog mode leading to a graded modulation of gene expression. In this manuscript, the authors report how these two regulatory modes are integrated into a one-way switch pattern to control the expression of the Arabidopsis floral repressor gene FLOWERING LOCUS C (FLC). They suggest that an analog regulation in the autonomous pathway precedes a digital regulation conferred by Polycomb silencing before cold exposure, and this temporal switch correlates with the strength of transcription at the FLC locus in different genetic backgrounds.

Reviewed by eLife

Cohesin is involved in transcriptional repression of stage-specific genes in the human malaria parasite

1. Catarina Rosa
2. Parul Singh
3. Ameya Sinha
4. Peter R Preiser
5. Peter C Dedon
6. Sebastian Baumgarten
7. Artur Scherf
8. Jessica M Bryant

Reviewed by Review Commons

The long noncoding RNA Charme supervises cardiomyocyte maturation by controlling cell differentiation programs in the developing heart

1. Valeria Taliani
2. Giulia Buonaiuto
3. Fabio Desideri
4. Adriano Setti
5. Tiziana Santini
6. Silvia Galfrè
7. Leonardo Schirone
8. Davide Mariani
9. Giacomo Frati
10. Valentina Valenti
11. Sebastiano Sciarretta
12. Emerald Perlas
13. Carmine Nicoletti
14. Antonio Musarò
15. Monica Ballarino

• Curated by eLife

  eLife assessment

  This manuscript reports important and valuable new data about the intriguing role of the lncRNA Charme during cardiac development. Whilst the majority of claims are convincingly supported by the data, the evidence for the cardiac phenotype and the mechanism by which Charme/MATR3 interacts is currently incomplete and requires additional experimental support. This paper is of general interest to cardiac developmental biologists as well as to anyone studying non-coding RNAs.

Reviewed by eLife

Histones with an unconventional DNA-binding mode in vitro are major chromatin constituents in the bacterium Bdellovibrio bacteriovorus

1. Antoine Hocher
2. Shawn P. Laursen
3. Paul Radford
4. Jess Tyson
5. Carey Lambert
6. Kathryn M. Stevens
7. Alex Montoya
8. Pavel V. Shliaha
9. Mathieu Picardeau
10. R. Elizabeth Sockett
11. Karolin Luger
12. Tobias Warnecke

Reviewed by Arcadia Science

HuR modulation counteracts lipopolysaccharide response in murine macrophages

1. Isabelle Bonomo
2. Giulia Assoni
3. Valeria La Pietra
4. Giulia Canarutto
5. Elisa Facen
6. Greta Donati
7. Chiara Zucal
8. Silvia Genovese
9. Mariachiara Micaelli
10. Anna Pérez-Ràfols
11. Sergio Robbiati
12. Dimitris L. Kontoyannis
13. Marilenia De Matteo
14. Marco Fragai
15. Pierfausto Seneci
16. Luciana Marinelli
17. Daniela Arosio
18. Silvano Piazza
19. Alessandro Provenzani

Reviewed by Review Commons

Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns

1. Leonid Serebreni
2. Lisa‐Marie Pleyer
3. Vanja Haberle
4. Oliver Hendy
5. Anna Vlasova
6. Vincent Loubiere
7. Filip Nemčko
8. Katharina Bergauer
9. Elisabeth Roitinger
10. Karl Mechtler
11. Alexander Stark

Reviewed by Review Commons

Iron status influences mitochondrial disease progression in Complex I-deficient mice

1. CJ Kelly
2. Reid K Couch
3. Vivian T Ha
4. Camille M Bodart
5. Judy Wu
6. Sydney Huff
7. Nicole T Herrel
8. Hyunsung D Kim
9. Azaad O Zimmermann
10. Jessica Shattuck
11. Yu-Chen Pan
12. Matt Kaeberlein
13. Anthony S Grillo

• Curated by eLife

  eLife assessment

  This manuscript starts from the hypothesis that a model of mitochondrial disease, the NDUFS4 knockout mouse, causes iron dysregulation, and that iron status may modify the neurological phenotypes that result in the mouse. This study has the potential to inform how body iron homeostasis can modify neurological phenotypes caused by mitochondrial disease. This study will be of interest to a broad audience of neuroscientists, particularly those with an interest in mitochondrial diseases.

Reviewed by eLife