Evaluated articles

Genotypic and phenotypic consequences of domestication in dogs

1. Sweetalana
2. Shirin Nataneli
3. Shengmiao Huang
4. Jazlyn A Mooney
5. Zachary A Szpiech

Reviewed by Arcadia Science

Light-Dependent Ethanol Assimilation By Model Red Microaga Galdieria sulphuraria

1. Igor Stadnichuk
2. Yulia Bolychevtseva

Reviewed by Arcadia Science

Miniaturizing, Modifying, and Augmenting Nature’s Proteins with Raygun

1. Kapil Devkota
2. Daichi Shonai
3. Joey Mao
4. Scott Soderling
5. Rohit Singh

Reviewed by Arcadia Science

Birth of new protein folds and functions in the virome

1. Jason Nomburg
2. Nathan Price
3. Jennifer A. Doudna

Reviewed by Arcadia Science

HyperMPNN – A general strategy to design thermostable proteins learned from hyperthermophiles

1. Moritz Ertelt
2. Phillip Schlegel
3. Max Beining
4. Leonard Kaysser
5. Jens Meiler
6. Clara T. Schoeder

Reviewed by Arcadia Science

Performance and Robustness of Parameter Estimation from Phylogenetic Trees Using Neural Networks

1. Tianjian Qin
2. Koen J. van Benthem
3. Luis Valente
4. Rampal S. Etienne

Reviewed by Arcadia Science

Fast evolutionary turnover and overlapping variances of sex-biased gene expression patterns defy a simple binary classification of sexes

1. Chen Xie
2. Sven Künzel
3. Diethard Tautz

• Curated by eLife

  eLife assessment

  This is a useful study on sex differences in gene expression across organs of four mice taxa, although there are some shortcomings in the data analyses and interpretations that should to be better placed in the broader context of the current literature. Hence, the evidence in the current form is incomplete, with several overstated key conclusions.

Reviewed by Arcadia Science, eLife

Genome-wide analysis of anterior-posterior mRNA regionalization in Stentor coeruleus reveals a role for the microtubule cytoskeleton

1. Ashley R. Albright
2. Connie Yan
3. David Angeles-Albores
4. Tatyana Makushok
5. Jamarc Allen-Henderson
6. Wallace F. Marshall

Reviewed by Arcadia Science

Organ structure and bacterial microbiogeography in a reproductive organ of the Hawaiian bobtail squid reveal dimensions of a defensive symbiosis

1. Derrick L. Kamp
2. Allison H. Kerwin
3. Sarah J. McAnulty
4. Spencer V. Nyholm

Reviewed by Arcadia Science

Aquavert – Imaging and Microfluidics for Vertical Swimming of Microorganisms

1. Haley B. Obenshain
2. Isaias Zarate
3. Olivia Hedman-Manzano
4. Jared Goderich
5. Sungho Lee
6. Bryant A. Lopez
7. Emma Varela
8. Ga-Young Kelly Suh
9. Douglas A. Pace
10. Siavash Ahrar

Reviewed by Arcadia Science

Adaptive cellular evolution in the intestinal tracts of hyperdiverse African cichlid fishes

1. Antoine Fages
2. Maëva Luxey
3. Fabrizia Ronco
4. Charlotte E.T. Huyghe
5. P. Navaneeth Krishna Menon
6. Adrian Indermaur
7. Walter Salzburger
8. Patrick Tschopp

Reviewed by Arcadia Science

In silico evolution of globular protein folds from random sequences

1. Harutyun Sahakyan
2. Sanasar G. Babajanyan
3. Yuri I. Wolf
4. Eugene V. Koonin

Reviewed by Arcadia Science

Non-invasive epidermal proteome assessment-based diagnosis and molecular subclassification of psoriasis and eczematous dermatitis

1. Michael J. Murphy
2. Gloria Chen
3. Princess Edemobi
4. Muhammad H. Junejo
5. A. Mitchel Wride
6. Sarah L. Spaulding
7. Yiwei Wang
8. Jeffrey M. Cohen
9. William Damsky

Reviewed by Arcadia Science

ConvCGP: A Convolutional Neural Network to Predict Genotypic Values of Rice Traits from Compressed Genome-Wide Polymorphisms

1. Tanzila Islam
2. Chyon Hae Kim
3. Hiroyuki Shimono
4. Akio Kimura
5. Hiroyoshi Iwata

Reviewed by Arcadia Science

A Large-Scale Foundation Model for RNA Function and Structure Prediction

1. Shuxian Zou
2. Tianhua Tao
3. Sazan Mahbub
4. Caleb N. Ellington
5. Robin Algayres
6. Dian Li
7. Yonghao Zhuang
8. Hongyi Wang
9. Le Song
10. Eric P. Xing

Reviewed by Arcadia Science

SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification

1. Francesco Padovani
2. Ivana Čavka
3. Ana Rita Rodrigues Neves
4. Cristina Piñeiro López
5. Nada Al-Refaie
6. Leonardo Bolcato
7. Dimitra Chatzitheodoridou
8. Yagya Chadha
9. Xiaofeng A. Su
10. Jette Lengefeld
11. Daphne S. Cabianca
12. Simone Köhler
13. Kurt M. Schmoller

Reviewed by Arcadia Science

Miniature: Unsupervised glimpses into multiplexed tissue imaging datasets as thumbnails for data portals

1. Adam J Taylor

Reviewed by Arcadia Science

Protein Language Models Expose Viral Mimicry and Immune Escape

1. Dan Ofer
2. Michal Linial

Reviewed by Arcadia Science

Pin4 Links Post-transcriptional and Transcriptional Responses to Glucose Starvation in Yeast

1. Michaela Ristová
2. Katherine Bexley
3. Vadim Shchepachev
4. Atlanta G. Cook
5. David Tollervey

Reviewed by Arcadia Science

Exploring evolution to uncover insights into protein mutational stability

1. Pauline Hermans
2. Matsvei Tsishyn
3. Martin Schwersensky
4. Marianne Rooman
5. Fabrizio Pucci

Reviewed by Arcadia Science