Evaluated articles

Fluctuations and the limit of predictability in protein evolution

1. Saverio Rossi
2. Leonardo Di Bari
3. Martin Weigt
4. Francesco Zamponi

Reviewed by Arcadia Science

Identification of a Neuroimmune Circuit that Regulates Allergic Inflammation in the Esophagus

1. Kendall Kellerman
2. Mia Natale
3. Eddie Gerstner
4. Yrina Rochman
5. Mark Rochman
6. Michael P. Jankowski
7. Marc E. Rothenberg

Reviewed by Arcadia Science

Proximity labeling defines the phagosome lumen proteome of murine and primary human macrophages

1. Benjamin L. Allsup
2. Supriya Gharpure
3. Bryan D. Bryson

Reviewed by Arcadia Science

A CRISPRi Library Screen in Group B Streptococcus Identifies Surface Immunogenic Protein (Sip) as a Mediator of Multiple Host Interactions

1. K Firestone
2. KP Gopalakrishna
3. LM Rogers
4. A Peters
5. JA Gaddy
6. C Nichols
7. MH Hall
8. HN Varela
9. SM Carlin
10. GH Hillebrand
11. EJ Giacobe
12. DM Aronoff
13. TA Hooven

Reviewed by Arcadia Science

Genotypic and phenotypic consequences of domestication in dogs

1. Sweetalana
2. Shirin Nataneli
3. Shengmiao Huang
4. Jazlyn A Mooney
5. Zachary A Szpiech

Reviewed by Arcadia Science

Light-Dependent Ethanol Assimilation By Model Red Microaga Galdieria sulphuraria

1. Igor Stadnichuk
2. Yulia Bolychevtseva

Reviewed by Arcadia Science

Miniaturizing, Modifying, and Magnifying Nature’s Proteins with Raygun

1. Kapil Devkota
2. Daichi Shonai
3. Joey Mao
4. Young Su Ko
5. Wei Wang
6. Scott Soderling
7. Rohit Singh

Reviewed by Arcadia Science

Birth of new protein folds and functions in the virome

1. Jason Nomburg
2. Nathan Price
3. Jennifer A. Doudna

Reviewed by Arcadia Science

HyperMPNN – A general strategy to design thermostable proteins learned from hyperthermophiles

1. Moritz Ertelt
2. Phillip Schlegel
3. Max Beining
4. Leonard Kaysser
5. Jens Meiler
6. Clara T. Schoeder

Reviewed by Arcadia Science

Performance and Robustness of Parameter Estimation from Phylogenetic Trees Using Neural Networks

1. Tianjian Qin
2. Koen J. van Benthem
3. Luis Valente
4. Rampal S. Etienne

Reviewed by Arcadia Science

Fast evolutionary turnover and overlapping variances of sex-biased gene expression patterns defy a simple binary classification of sexes

1. Chen Xie
2. Sven Künzel
3. Diethard Tautz

• Curated by eLife

  eLife Assessment

  This study presents useful data on sex differences in gene expression across organs of four mice taxa. While the methods and analysis are largely sound, the strength of evidence is solid only in parts and the conclusions drawn from the results are not always appropriate.

Reviewed by eLife, Arcadia Science

Genome-wide analysis of anterior-posterior mRNA regionalization in Stentor coeruleus reveals a role for the microtubule cytoskeleton

1. Ashley R. Albright
2. Connie Yan
3. David Angeles-Albores
4. Tatyana Makushok
5. Jamarc Allen-Henderson
6. Wallace F. Marshall

Reviewed by Arcadia Science

Organ structure and bacterial microbiogeography in a reproductive organ of the Hawaiian bobtail squid reveal dimensions of a defensive symbiosis

1. Derrick L. Kamp
2. Allison H. Kerwin
3. Sarah J. McAnulty
4. Spencer V. Nyholm

Reviewed by Arcadia Science

Aquavert – Imaging and Microfluidics for Vertical Swimming of Microorganisms

1. Haley B. Obenshain
2. Isaias Zarate
3. Olivia Hedman-Manzano
4. Jared Goderich
5. Sungho Lee
6. Bryant A. Lopez
7. Emma Varela
8. Ga-Young Kelly Suh
9. Douglas A. Pace
10. Siavash Ahrar

Reviewed by Arcadia Science

Adaptive cellular evolution in the intestinal tracts of hyperdiverse African cichlid fishes

1. Antoine Fages
2. Maëva Luxey
3. Fabrizia Ronco
4. Charlotte E.T. Huyghe
5. P. Navaneeth Krishna Menon
6. Adrian Indermaur
7. Walter Salzburger
8. Patrick Tschopp

Reviewed by Arcadia Science

In silico evolution of globular protein folds from random sequences

1. Harutyun Sahakyan
2. Sanasar G. Babajanyan
3. Yuri I. Wolf
4. Eugene V. Koonin

Reviewed by Arcadia Science

Non-invasive epidermal proteome assessment-based diagnosis and molecular subclassification of psoriasis and eczematous dermatitis

1. Michael J. Murphy
2. Gloria Chen
3. Princess Edemobi
4. Muhammad H. Junejo
5. A. Mitchel Wride
6. Sarah L. Spaulding
7. Yiwei Wang
8. Jeffrey M. Cohen
9. William Damsky

Reviewed by Arcadia Science

ConvCGP: A Convolutional Neural Network to Predict Genotypic Values of Rice Traits from Compressed Genome-Wide Polymorphisms

1. Tanzila Islam
2. Chyon Hae Kim
3. Hiroyuki Shimono
4. Akio Kimura
5. Hiroyoshi Iwata

Reviewed by Arcadia Science

A Large-Scale Foundation Model for RNA Function and Structure Prediction

1. Shuxian Zou
2. Tianhua Tao
3. Sazan Mahbub
4. Caleb N. Ellington
5. Robin Algayres
6. Dian Li
7. Yonghao Zhuang
8. Hongyi Wang
9. Le Song
10. Eric P. Xing

Reviewed by Arcadia Science

SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification

1. Francesco Padovani
2. Ivana Čavka
3. Ana Rita Rodrigues Neves
4. Cristina Piñeiro López
5. Nada Al-Refaie
6. Leonardo Bolcato
7. Dimitra Chatzitheodoridou
8. Yagya Chadha
9. Xiaofeng A. Su
10. Jette Lengefeld
11. Daphne S. Cabianca
12. Simone Köhler
13. Kurt M. Schmoller

Reviewed by Arcadia Science