GigaScience

Latest preprint reviews

1. Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows

   This article has 4 authors:

   1. Hirotaka Suetake
   2. Tsukasa Fukusato
   3. Takeo Igarashi
   4. Tazro Ohta

   Reviewed by Arcadia Science, GigaScience

2. Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus

   This article has 3 authors:

   1. Jeremiah Miller
   2. Aleksey V Zimin
   3. Andrew Gordus

   Reviewed by GigaScience

3. A molecular phenotypic map of malignant pleural mesothelioma

   This article has 7 authors:

   1. Alex Di Genova
   2. Lise Mangiante
   3. Alexandra Sexton-Oates
   4. Catherine Voegele
   5. Lynnette Fernandez-Cuesta
   6. Nicolas Alcala
   7. Matthieu Foll

   Reviewed by GigaScience

4. scShapes: a statistical framework for identifying distribution shapes in single-cell RNA-sequencing data

   This article has 4 authors:

   1. Malindrie Dharmaratne
   2. Ameya S Kulkarni
   3. Atefeh Taherian Fard
   4. Jessica C Mar

   Reviewed by GigaScience

5. xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments

   This article has 13 authors:

   1. Jesse Farek
   2. Daniel Hughes
   3. Adam Mansfield
   4. Olga Krasheninina
   5. Waleed Nasser
   6. Fritz J Sedlazeck
   7. Ziad Khan
   8. Eric Venner
   9. Ginger Metcalf
   10. Eric Boerwinkle
   11. Donna M Muzny
   12. Richard A Gibbs
   13. William Salerno

   Reviewed by GigaScience

6. Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation

   This article has 15 authors:

   1. Harsh Shukla
   2. Kushal Suryamohan
   3. Anubhab Khan
   4. Krishna Mohan
   5. Rajadurai C Perumal
   6. Oommen K Mathew
   7. Ramesh Menon
   8. Mandumpala Davis Dixon
   9. Megha Muraleedharan
   10. Boney Kuriakose
   11. Saju Michael
   12. Sajesh P Krishnankutty
   13. Arun Zachariah
   14. Somasekar Seshagiri
   15. Uma Ramakrishnan

   Reviewed by GigaScience

7. Accurate and Fast Clade Assignment via Deep Learning and Frequency Chaos Game Representation

   This article has 5 authors:

   1. Jorge Avila Cartes
   2. Santosh Anand
   3. Simone Ciccolella
   4. Paola Bonizzoni
   5. Gianluca Della Vedova

   Reviewed by GigaScience

8. A Chromosome-level Assembly of the Japanese Eel Genome, Insights into Gene Duplication and Chromosomal Reorganization

   This article has 13 authors:

   1. Hongbo Wang
   2. Hin Ting Wan
   3. Bin Wu
   4. Jianbo Jian
   5. Alice HM Ng
   6. Claire Yik-Lok Chung
   7. Eugene Yui-Ching Chow
   8. Jizhou Zhang
   9. Anderson OL Wong
   10. Keng Po Lai
   11. Ting Fung Chan
   12. Eric Lu Zhang
   13. Chris Kong-Chu Wong

   Reviewed by GigaScience

9. DeePVP: Identification and classification of phage virion proteins using deep learning

   This article has 4 authors:

   1. Zhencheng Fang
   2. Tao Feng
   3. Hongwei Zhou
   4. Muxuan Chen

   Reviewed by GigaScience

10. Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing

    This article has 22 authors:

    1. Hollis A Dahn
    2. Jacquelyn Mountcastle
    3. Jennifer Balacco
    4. Sylke Winkler
    5. Iliana Bista
    6. Anthony D Schmitt
    7. Olga Vinnere Pettersson
    8. Giulio Formenti
    9. Karen Oliver
    10. Michelle Smith
    11. Wenhua Tan
    12. Anne Kraus
    13. Stephen Mac
    14. Lisa M Komoroske
    15. Tanya Lama
    16. Andrew J Crawford
    17. Robert W Murphy
    18. Samara Brown
    19. Alan F Scott
    20. Phillip A Morin
    21. Erich D Jarvis
    22. Olivier Fedrigo

    Reviewed by GigaScience