GigaScience

Latest preprint reviews

1. Contamination detection and microbiome exploration with GRIMER

   This article has 2 authors:

   1. Vitor C. Piro
   2. Bernhard Y. Renard

   Reviewed by GigaScience

2. The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology

   This article has 16 authors:

   1. J. William O. Ballard
   2. Matt A. Field
   3. Richard J. Edwards
   4. Laura A.B. Wilson
   5. Loukas G. Koungoulos
   6. Benjamin D. Rosen
   7. Barry Chernoff
   8. Olga Dudchenko
   9. Arina Omer
   10. Jens Keilwagen
   11. Ksenia Skvortsova
   12. Ozren Bogdanovic
   13. Eva Chan
   14. Robert Zammit
   15. Vanessa Hayes
   16. Erez Lieberman Aiden

   Reviewed by GigaScience

3. Cell type–specific interpretation of noncoding variants using deep learning–based methods

   This article has 9 authors:

   1. Maria Sindeeva
   2. Nikolay Chekanov
   3. Manvel Avetisian
   4. Tatiana I Shashkova
   5. Nikita Baranov
   6. Elian Malkin
   7. Alexander Lapin
   8. Olga Kardymon
   9. Veniamin Fishman

   Reviewed by GigaScience

4. ViReMa : a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids

   This article has 7 authors:

   1. Stephanea Sotcheff
   2. Yiyang Zhou
   3. Jason Yeung
   4. Yan Sun
   5. John E Johnson
   6. Bruce E Torbett
   7. Andrew L Routh

   Reviewed by GigaScience

5. Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

   This article has 6 authors:

   1. Chen Yang
   2. Theodora Lo
   3. Ka Ming Nip
   4. Saber Hafezqorani
   5. René L Warren
   6. Inanc Birol

   Reviewed by GigaScience

6. FAIR data station for lightweight metadata management and validation of omics studies

   This article has 3 authors:

   1. Bart Nijsse
   2. Peter J Schaap
   3. Jasper J Koehorst

   Reviewed by GigaScience

7. 3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

   This article has 32 authors:

   1. Mihaly Varadi
   2. Sreenath Nair
   3. Ian Sillitoe
   4. Gerardo Tauriello
   5. Stephen Anyango
   6. Stefan Bienert
   7. Clemente Borges
   8. Mandar Deshpande
   9. Tim Green
   10. Demis Hassabis
   11. Andras Hatos
   12. Tamas Hegedus
   13. Maarten L Hekkelman
   14. Robbie Joosten
   15. John Jumper
   16. Agata Laydon
   17. Dmitry Molodenskiy
   18. Damiano Piovesan
   19. Edoardo Salladini
   20. Steven L. Salzberg
   21. Markus J Sommer
   22. Martin Steinegger
   23. Erzsebet Suhajda
   24. Dmitri Svergun
   25. Luiggi Tenorio-Ku
   26. Silvio Tosatto
   27. Kathryn Tunyasuvunakool
   28. Andrew Mark Waterhouse
   29. Augustin Žídek
   30. Torsten Schwede
   31. Christine Orengo
   32. Sameer Velankar

   Reviewed by GigaScience

8. Making Common Fund data more findable: Catalyzing a Data Ecosystem

   This article has 37 authors:

   1. Amanda L Charbonneau
   2. Arthur Brady
   3. Karl Czajkowski
   4. Jain Aluvathingal
   5. Saranya Canchi
   6. Robert Carter
   7. Kyle Chard
   8. Daniel J.B. Clarke
   9. Heather H Creasy
   10. Mike D’Arcy
   11. Michelle Giglio
   12. Alicia Gingrich
   13. Rayna M Harris
   14. Theresa K Hodges
   15. Olukemi Ifeonu
   16. Minji Jeon
   17. Eryk Kropiwnicki
   18. Marisa C.W. Lim
   19. R. Lee Liming
   20. Meisha Mandal
   21. James B Munro
   22. Suvarna Nadendla
   23. Rudyard Richter
   24. Cia Romano
   25. Philippe Rocca-Serra
   26. Robert E. Schuler
   27. Hongsuda Tangmunarunkit
   28. Alex Waldrop
   29. Cris Williams
   30. Karen Word
   31. Susanna-Assunta Sansone
   32. Avi Ma’ayan
   33. Rick Wagner
   34. Ian Foster
   35. Carl Kesselman
   36. C. Titus Brown
   37. Owen White

   Reviewed by GigaScience

9. Utilizing artificial intelligence system to build the digital structural proteome of reef-building corals

   This article has 6 authors:

   1. Yunchi Zhu
   2. Xin Liao
   3. Tingyu Han
   4. J.-Y. Chen
   5. Chunpeng He
   6. Zuhong Lu

   Reviewed by GigaScience

10. What the Phage: A scalable workflow for the identification and analysis of phage sequences

    This article has 7 authors:

    1. Mike Marquet
    2. Martin Hölzer
    3. Mathias W. Pletz
    4. Adrian Viehweger
    5. Oliwia Makarewicz
    6. Ralf Ehricht
    7. Christian Brandt

    Reviewed by GigaScience