GigaScience

Latest preprint reviews

1. Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

   This article has 6 authors:

   1. Chen Yang
   2. Theodora Lo
   3. Ka Ming Nip
   4. Saber Hafezqorani
   5. Rene L Warren
   6. Inanc Birol

   Reviewed by GigaScience

2. FAIR data station for lightweight metadata management and validation of omics studies

   This article has 3 authors:

   1. Bart Nijsse
   2. Peter J Schaap
   3. Jasper J Koehorst

   Reviewed by GigaScience

3. 3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

   This article has 32 authors:

   1. Mihaly Varadi
   2. Sreenath Nair
   3. Ian Sillitoe
   4. Gerardo Tauriello
   5. Stephen Anyango
   6. Stefan Bienert
   7. Clemente Borges
   8. Mandar Deshpande
   9. Tim Green
   10. Demis Hassabis
   11. Andras Hatos
   12. Tamas Hegedus
   13. Maarten L Hekkelman
   14. Robbie Joosten
   15. John Jumper
   16. Agata Laydon
   17. Dmitry Molodenskiy
   18. Damiano Piovesan
   19. Edoardo Salladini
   20. Steven L. Salzberg
   21. Markus J Sommer
   22. Martin Steinegger
   23. Erzsebet Suhajda
   24. Dmitri Svergun
   25. Luiggi Tenorio-Ku
   26. Silvio Tosatto
   27. Kathryn Tunyasuvunakool
   28. Andrew Mark Waterhouse
   29. Augustin Žídek
   30. Torsten Schwede
   31. Christine Orengo
   32. Sameer Velankar

   Reviewed by GigaScience

4. Making Common Fund data more findable: Catalyzing a Data Ecosystem

   This article has 37 authors:

   1. Amanda L Charbonneau
   2. Arthur Brady
   3. Karl Czajkowski
   4. Jain Aluvathingal
   5. Saranya Canchi
   6. Robert Carter
   7. Kyle Chard
   8. Daniel J.B. Clarke
   9. Heather H Creasy
   10. Mike D’Arcy
   11. Michelle Giglio
   12. Alicia Gingrich
   13. Rayna M Harris
   14. Theresa K Hodges
   15. Olukemi Ifeonu
   16. Minji Jeon
   17. Eryk Kropiwnicki
   18. Marisa C.W. Lim
   19. R. Lee Liming
   20. Meisha Mandal
   21. James B Munro
   22. Suvarna Nadendla
   23. Rudyard Richter
   24. Cia Romano
   25. Philippe Rocca-Serra
   26. Robert E. Schuler
   27. Hongsuda Tangmunarunkit
   28. Alex Waldrop
   29. Cris Williams
   30. Karen Word
   31. Susanna-Assunta Sansone
   32. Avi Ma’ayan
   33. Rick Wagner
   34. Ian Foster
   35. Carl Kesselman
   36. C. Titus Brown
   37. Owen White

   Reviewed by GigaScience

5. Utilizing artificial intelligence system to build the digital structural proteome of reef-building corals

   This article has 6 authors:

   1. Yunchi Zhu
   2. Xin Liao
   3. Tingyu Han
   4. J.-Y. Chen
   5. Chunpeng He
   6. Zuhong Lu

   Reviewed by GigaScience

6. What the Phage: A scalable workflow for the identification and analysis of phage sequences

   This article has 7 authors:

   1. Mike Marquet
   2. Martin Hölzer
   3. Mathias W. Pletz
   4. Adrian Viehweger
   5. Oliwia Makarewicz
   6. Ralf Ehricht
   7. Christian Brandt

   Reviewed by GigaScience

7. Defining the Characteristics of Type I Interferon Stimulated Genes: Insight from Expression Data and Machine Learning

   This article has 4 authors:

   1. Haiting Chai
   2. Quan Gu
   3. Joseph Hughes
   4. David L. Robertson

   Reviewed by GigaScience

8. Whole-genome sequencing of Chinese native goat offers biological insights into cashmere fiber formation

   This article has 21 authors:

   1. Hu Han
   2. Man-Man Yang
   3. Jiang Dan
   4. Xing-Ju Zhang
   5. Qiang Wei
   6. Tao Chen
   7. Qi-Ju Wang
   8. Cheng-Ye Yang
   9. Bater Wulan
   10. Ting-Ting Zhang
   11. Gang Gen
   12. Mengkedala
   13. Bin Li
   14. Wei-Dong Deng
   15. Ze-Pu Miao
   16. Ran Wang
   17. Qing-Feng Zhang
   18. Lin Li
   19. Sheng-Yu Chao
   20. Ming Fang
   21. Yong Li

   Reviewed by GigaScience

9. TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles

   This article has 4 authors:

   1. Varuni Sarwal
   2. Jaqueline Brito
   3. Serghei Mangul
   4. David Koslicki

   Reviewed by GigaScience

10. Contrast Subgraphs Allow Comparing Homogeneous and Heterogeneous Networks Derived from Omics Data

    This article has 6 authors:

    1. Tommaso Lanciano
    2. Aurora Savino
    3. Francesca Porcu
    4. Davide Cittaro
    5. Francesco Bonchi
    6. Paolo Provero

    Reviewed by GigaScience