GigaScience

Latest preprint reviews

1. Stardust: improving spatial transcriptomics data analysis through space aware modularity optimization based clustering

   This article has 8 authors:

   1. Simone Avesani
   2. Eva Viesi
   3. Luca Alessandrì
   4. Giovanni Motterle
   5. Vincenzo Bonnici
   6. Marco Beccuti
   7. Raffaele Calogero
   8. Rosalba Giugno

   Reviewed by GigaScience

2. SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data

   This article has 5 authors:

   1. Yunwei Zhang
   2. Germaine Wong
   3. Graham Mann
   4. Samuel Muller
   5. Jean Y H Yang

   Reviewed by GigaScience

3. Meta-Prism 2.0: Enabling algorithm for ultra-fast, accurate and memory-efficient search among millions of microbial community samples

   This article has 3 authors:

   1. Kai Kang
   2. Hui Chong
   3. Kang Ning

   Reviewed by GigaScience

4. BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data

   This article has 6 authors:

   1. Carol Moraga
   2. Evelyn Sanchez
   3. Mariana Galvão Ferrarini
   4. Rodrigo A. Gutierrez
   5. Elena A. Vidal
   6. Marie-France Sagot

   Reviewed by GigaScience

5. Disease classification for whole blood DNA methylation: meta-analysis, missing values imputation, and XAI

   This article has 6 authors:

   1. Alena Kalyakulina
   2. Igor Yusipov
   3. Maria Giulia Bacalini
   4. Claudio Franceschi
   5. Maria Vedunova
   6. Mikhail Ivanchenko

   Reviewed by GigaScience

6. High-Spatiotemporal-Resolution Nanopore Sequencing of SARS-CoV-2 and Host Cell RNAs

   This article has 10 authors:

   1. Dóra Tombácz
   2. Ákos Dörmő
   3. Gábor Gulyás
   4. Zsolt Csabai
   5. István Prazsák
   6. Balázs Kakuk
   7. Ákos Harangozó
   8. István Jankovics
   9. Béla Dénes
   10. Zsolt Boldogkői

   Reviewed by GigaScience, ScreenIT

7. Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other non-standard architectures in genome assemblies

   This article has 4 authors:

   1. Miguel A. Naranjo-Ortiz
   2. Manu Molina
   3. Verónica Mixão
   4. Toni Gabaldón

   Reviewed by GigaScience

8. A curated human cellular microRNAome based on 196 primary cell types

   This article has 5 authors:

   1. Arun H. Patil
   2. Andrea Baran
   3. Zachary P. Brehm
   4. Matthew N. McCall
   5. Marc K. Halushka

   Reviewed by GigaScience

9. Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize

   This article has 12 authors:

   1. Ravi V. Mural
   2. Guangchao Sun
   3. Marcin Grzybowski
   4. Michael C. Tross
   5. Hongyu Jin
   6. Christine Smith
   7. Linsey Newton
   8. Carson M. Andorf
   9. Margaret R. Woodhouse
   10. Addie M. Thompson
   11. Brandi Sigmon
   12. James C. Schnable

   Reviewed by GigaScience

10. Spacemake: processing and analysis of large-scale spatial transcriptomics data

    This article has 4 authors:

    1. Tamas Ryszard Sztanka-Toth
    2. Marvin Jens
    3. Nikos Karaiskos
    4. Nikolaus Rajewsky

    Reviewed by GigaScience