GigaScience

Latest preprint reviews

1. DivBrowse—interactive visualization and exploratory data analysis of variant call matrices

   This article has 6 authors:

   1. Patrick König
   2. Sebastian Beier
   3. Martin Mascher
   4. Nils Stein
   5. Matthias Lange
   6. Uwe Scholz

   Reviewed by GigaScience

2. The Regulatory Mendelian Mutation score for GRCh38

   This article has 3 authors:

   1. Lusiné Nazaretyan
   2. Martin Kircher
   3. Max Schubach

   Reviewed by GigaScience

3. The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics

   This article has 16 authors:

   1. Luc Cornet
   2. Benoit Durieu
   3. Frederik Baert
   4. Elizabet D'hooge
   5. David Colignon
   6. Loic Meunier
   7. Valérian Lupo
   8. Ilse Cleenwerck
   9. Heide-Marie Daniel
   10. Leen Rigouts
   11. Damien Sirjacobs
   12. Stéphane Declerck
   13. Peter Vandamme
   14. Annick Wilmotte
   15. Denis Baurain
   16. Pierre Becker

   Reviewed by GigaScience

4. Contamination detection and microbiome exploration with GRIMER

   This article has 2 authors:

   1. Vitor C Piro
   2. Bernhard Y Renard

   Reviewed by GigaScience

5. The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology

   This article has 16 authors:

   1. J. William O. Ballard
   2. Matt A. Field
   3. Richard J. Edwards
   4. Laura A.B. Wilson
   5. Loukas G. Koungoulos
   6. Benjamin D. Rosen
   7. Barry Chernoff
   8. Olga Dudchenko
   9. Arina Omer
   10. Jens Keilwagen
   11. Ksenia Skvortsova
   12. Ozren Bogdanovic
   13. Eva Chan
   14. Robert Zammit
   15. Vanessa Hayes
   16. Erez Lieberman Aiden

   Reviewed by GigaScience

6. Cell type–specific interpretation of noncoding variants using deep learning–based methods

   This article has 9 authors:

   1. Maria Sindeeva
   2. Nikolay Chekanov
   3. Manvel Avetisian
   4. Tatiana I Shashkova
   5. Nikita Baranov
   6. Elian Malkin
   7. Alexander Lapin
   8. Olga Kardymon
   9. Veniamin Fishman

   Reviewed by GigaScience

7. ViReMa : a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids

   This article has 7 authors:

   1. Stephanea Sotcheff
   2. Yiyang Zhou
   3. Jason Yeung
   4. Yan Sun
   5. John E Johnson
   6. Bruce E Torbett
   7. Andrew L Routh

   Reviewed by GigaScience

8. Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

   This article has 6 authors:

   1. Chen Yang
   2. Theodora Lo
   3. Ka Ming Nip
   4. Saber Hafezqorani
   5. René L Warren
   6. Inanc Birol

   Reviewed by GigaScience

9. FAIR data station for lightweight metadata management and validation of omics studies

   This article has 3 authors:

   1. Bart Nijsse
   2. Peter J Schaap
   3. Jasper J Koehorst

   Reviewed by GigaScience

10. 3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

    This article has 32 authors:

    1. Mihaly Varadi
    2. Sreenath Nair
    3. Ian Sillitoe
    4. Gerardo Tauriello
    5. Stephen Anyango
    6. Stefan Bienert
    7. Clemente Borges
    8. Mandar Deshpande
    9. Tim Green
    10. Demis Hassabis
    11. Andras Hatos
    12. Tamas Hegedus
    13. Maarten L Hekkelman
    14. Robbie Joosten
    15. John Jumper
    16. Agata Laydon
    17. Dmitry Molodenskiy
    18. Damiano Piovesan
    19. Edoardo Salladini
    20. Steven L. Salzberg
    21. Markus J Sommer
    22. Martin Steinegger
    23. Erzsebet Suhajda
    24. Dmitri Svergun
    25. Luiggi Tenorio-Ku
    26. Silvio Tosatto
    27. Kathryn Tunyasuvunakool
    28. Andrew Mark Waterhouse
    29. Augustin Žídek
    30. Torsten Schwede
    31. Christine Orengo
    32. Sameer Velankar

    Reviewed by GigaScience