GigaScience

Latest preprint reviews

1. When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes

   This article has 7 authors:

   1. Bianca-Maria Cosma
   2. Ramin Shirali Hossein Zade
   3. Erin Noel Jordan
   4. Paul van Lent
   5. Chengyao Peng
   6. Stephanie Pillay
   7. Thomas Abeel

   Reviewed by GigaScience

2. SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis

   This article has 10 authors:

   1. Akshay Akshay
   2. Mitali Katoch
   3. Masoud Abedi
   4. Mustafa Besic
   5. Navid Shekarchizadeh
   6. Fiona C. Burkhard
   7. Alex Bigger-Allen
   8. Rosalyn M. Adam
   9. Katia Monastyrskaya
   10. Ali Hashemi Gheinani

   Reviewed by GigaScience

3. cellsnake: a user-friendly tool for single-cell RNA sequencing analysis

   This article has 7 authors:

   1. Sinan U. Umu
   2. Karoline Rapp Vander-Elst
   3. Victoria T. Karlsen
   4. Manto Chouliara
   5. Espen Sønderaal Bækkevold
   6. Frode Lars Jahnsen
   7. Diana Domanska

   Reviewed by GigaScience

4. Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps

   This article has 12 authors:

   1. Cristiane Hayumi Taniguti
   2. Lucas Mitsuo Taniguti
   3. Rodrigo Rampazo Amadeu
   4. Jeekin Lau
   5. Gabriel de Siqueira Gesteira
   6. Thiago de Paula Oliveira
   7. Getulio Caixeta Ferreira
   8. Guilherme da Silva Pereira
   9. David Byrne
   10. Marcelo Mollinari
   11. Oscar Riera-Lizarazu
   12. Antonio Augusto Franco Garcia

   Reviewed by GigaScience

5. Computational prediction of human deep intronic variation

   This article has 4 authors:

   1. Pedro Barbosa
   2. Rosina Savisaar
   3. Maria Carmo-Fonseca
   4. Alcides Fonseca

   Reviewed by GigaScience

6. Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections

   This article has 7 authors:

   1. Hirofumi Aso
   2. Jumpei Ito
   3. Haruka Ozaki
   4. Yukie Kashima
   5. Yutaka Suzuki
   6. Yoshio Koyanagi
   7. Kei Sato

   Reviewed by GigaScience

7. Integrating deep mutational scanning and low-throughput mutagenesis data to predict the impact of amino acid variants

   This article has 4 authors:

   1. Yunfan Fu
   2. Justin Bedő
   3. Anthony T. Papenfuss
   4. Alan F. Rubin

   Reviewed by GigaScience

8. Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids

   This article has 6 authors:

   1. Anneri Lötter
   2. Tuan A Duong
   3. Julia Candotti
   4. Eshchar Mizrachi
   5. Jill L Wegrzyn
   6. Alexander A Myburg

   Reviewed by GigaScience

9. KGML-xDTD: A Knowledge Graph-based Machine Learning Framework for Drug Treatment Prediction and Mechanism Description

   This article has 4 authors:

   1. Chunyu Ma
   2. Zhihan Zhou
   3. Han Liu
   4. David Koslicki

   Reviewed by GigaScience

10. GADMA2: more efficient and flexible demographic inference from genetic data

    This article has 6 authors:

    1. Ekaterina Noskova
    2. Nikita Abramov
    3. Stanislav Iliutkin
    4. Anton Sidorin
    5. Pavel Dobrynin
    6. Vladimir Ulyantsev

    Reviewed by GigaScience