GigaScience

Latest preprint reviews

1. The probability of edge existence due to node degree: a baseline for network-based predictions

   This article has 6 authors:

   1. Michael Zietz
   2. Daniel S Himmelstein
   3. Kyle Kloster
   4. Christopher Williams
   5. Michael W Nagle
   6. Casey S Greene

   Reviewed by GigaScience

2. spatiAlign: An Unsupervised Contrastive Learning Model for Data Integration of Spatially Resolved Transcriptomics

   This article has 10 authors:

   1. Chao Zhang
   2. Lin Liu
   3. Ying Zhang
   4. Mei Li
   5. Shuangsang Fang
   6. Qiang Kang
   7. Ao Chen
   8. Xun Xu
   9. Yong Zhang
   10. Yuxiang Li

   Reviewed by GigaScience

3. Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning–driven data analysis

   This article has 9 authors:

   1. Akshay Akshay
   2. Mitali Katoch
   3. Navid Shekarchizadeh
   4. Masoud Abedi
   5. Ankush Sharma
   6. Fiona C Burkhard
   7. Rosalyn M Adam
   8. Katia Monastyrskaya
   9. Ali Hashemi Gheinani

   Reviewed by GigaScience

4. A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object

   This article has 13 authors:

   1. Anna Niehues
   2. Casper de Visser
   3. Fiona A. Hagenbeek
   4. Purva Kulkarni
   5. Rene Pool
   6. Naama Karu
   7. Alida S. D. Kindt
   8. Gurnoor Singh
   9. Robert R. J. M. Vermeiren
   10. Dorret I. Boomsma
   11. Jenny van Dongen
   12. Peter A. C. 't Hoen
   13. Alain J. van Gool

   Reviewed by GigaScience

5. Vulture: cloud-enabled scalable mining of microbial reads in public scRNA-seq data

   This article has 6 authors:

   1. Junyi Chen
   2. Danqing Yin
   3. Harris Y H Wong
   4. Xin Duan
   5. Ken H O Yu
   6. Joshua W K Ho

   Reviewed by GigaScience

6. A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes

   This article has 9 authors:

   1. Stephanie H Chen
   2. Alyssa M Martino
   3. Zhenyan Luo
   4. Benjamin Schwessinger
   5. Ashley Jones
   6. Tamene Tolessa
   7. Jason G Bragg
   8. Peri A Tobias
   9. Richard J Edwards

   Reviewed by GigaScience

7. Variance Analysis of LC-MS Experimental Factors and Their Impact on Machine Learning

   This article has 7 authors:

   1. Tobias Greisager Rehfeldt
   2. Konrad Krawczyk
   3. Simon Gregersen Echers
   4. Paolo Marcatili
   5. Pawel Palczynski
   6. Richard Röttger
   7. Veit Schwämmle

   Reviewed by GigaScience

8. Finding the LMA needle in the wheat proteome haystack

   This article has 11 authors:

   1. Delphine Vincent
   2. AnhDuyen Bui
   3. Vilnis Ezernieks
   4. Saleh Shahinfar
   5. Timothy Luke
   6. Doris Ram
   7. Nicholas Rigas
   8. Joe Panozzo
   9. Simone Rochfort
   10. Hans Daetwyler
   11. Matthew Hayden

   Reviewed by GigaScience

9. When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes

   This article has 7 authors:

   1. Bianca-Maria Cosma
   2. Ramin Shirali Hossein Zade
   3. Erin Noel Jordan
   4. Paul van Lent
   5. Chengyao Peng
   6. Stephanie Pillay
   7. Thomas Abeel

   Reviewed by GigaScience

10. SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis

    This article has 10 authors:

    1. Akshay Akshay
    2. Mitali Katoch
    3. Masoud Abedi
    4. Mustafa Besic
    5. Navid Shekarchizadeh
    6. Fiona C. Burkhard
    7. Alex Bigger-Allen
    8. Rosalyn M. Adam
    9. Katia Monastyrskaya
    10. Ali Hashemi Gheinani

    Reviewed by GigaScience