GigaScience

Latest preprint reviews

1. CAT Bridge: An Efficient Toolkit for Gene-Metabolite Association Mining from Multi-Omics Data

   This article has 11 authors:

   1. Bowen Yang
   2. Tan Meng
   3. Xinrui Wang
   4. Jun Li
   5. Shuang Zhao
   6. Yingheng Wang
   7. Shu Yi
   8. Yi Zhou
   9. Yi Zhang
   10. Liang Li
   11. Li Guo

   Reviewed by GigaScience

2. Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)

   This article has 5 authors:

   1. Seth A. Frazer
   2. Mahdi Baghbanzadeh
   3. Ali Rahnavard
   4. Keith A. Crandall
   5. Todd H. Oakley

   Reviewed by GigaScience

3. CoCoPyE: feature engineering for learning and prediction of genome quality indices

   This article has 7 authors:

   1. Niklas Birth
   2. Nicolina Leppich
   3. Julia Schirmacher
   4. Nina Andreae
   5. Rasmus Steinkamp
   6. Matthias Blanke
   7. Peter Meinicke

   Reviewed by GigaScience

4. MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment

   This article has 11 authors:

   1. Abigayle Simpson
   2. Elisha M Wood-Charlson
   3. Montana Smith
   4. Benjamin J Koch
   5. Kathleen Beilsmith
   6. Jeffrey A Kimbrel
   7. Matthew Kellom
   8. Christopher I Hunter
   9. Ramona L Walls
   10. Lynn M Schriml
   11. Roland C Wilhelm

   Reviewed by GigaScience

5. StereoSiTE: a framework to spatially and quantitatively profile the cellular neighborhood organized iTME

   This article has 18 authors:

   1. Xing Liu
   2. Chi Qu
   3. Chuandong Liu
   4. Na Zhu
   5. Huaqiang Huang
   6. Fei Teng
   7. Caili Huang
   8. Bingying Luo
   9. Xuanzhu Liu
   10. Min Xie
   11. Feng Xi
   12. Mei Li
   13. Liang Wu
   14. Yuxiang Li
   15. Ao Chen
   16. Xun Xu
   17. Sha Liao
   18. Jiajun Zhang

   Reviewed by GigaScience

6. V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation

   This article has 19 authors:

   1. Lara Fuhrmann
   2. Kim Philipp Jablonski
   3. Ivan Topolsky
   4. Aashil A Batavia
   5. Nico Borgsmüller
   6. Pelin Icer Baykal
   7. Matteo Carrara
   8. Chaoran Chen
   9. Arthur Dondi
   10. Monica Dragan
   11. David Dreifuss
   12. Anika John
   13. Benjamin Langer
   14. Michal Okoniewski
   15. Louis du Plessis
   16. Uwe Schmitt
   17. Franziska Singer
   18. Tanja Stadler
   19. Niko Beerenwinkel

   Reviewed by GigaScience

7. TooManyCellsInteractive: A visualization tool for dynamic exploration of single-cell data

   This article has 4 authors:

   1. Conor Klamann
   2. Christie J Lau
   3. Javier Ruiz-Ramírez
   4. Gregory W Schwartz

   Reviewed by GigaScience

8. MOBFinder: a tool for MOB typing for plasmid metagenomic fragments based on language model

   This article has 4 authors:

   1. Tao Feng
   2. Shufang Wu
   3. Hongwei Zhou
   4. Zhencheng Fang

   Reviewed by GigaScience

9. CAT: a computational anatomy toolbox for the analysis of structural MRI data

   This article has 6 authors:

   1. Christian Gaser
   2. Robert Dahnke
   3. Paul M Thompson
   4. Florian Kurth
   5. Eileen Luders
   6. the Alzheimer's Disease Neuroimaging Initiative

   Reviewed by GigaScience

10. Deciphering cancer genomes with GenomeSpy: a grammar-based visualization toolkit

    This article has 13 authors:

    1. Kari Lavikka
    2. Jaana Oikkonen
    3. Yilin Li
    4. Taru Muranen
    5. Giulia Micoli
    6. Giovanni Marchi
    7. Alexandra Lahtinen
    8. Kaisa Huhtinen
    9. Rainer Lehtonen
    10. Sakari Hietanen
    11. Johanna Hynninen
    12. Anni Virtanen
    13. Sampsa Hautaniemi

    Reviewed by GigaScience