GigaScience

Latest preprint reviews

1. PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata

   This article has 6 authors:

   1. Nathan J. LeRoy
   2. Oleksandr Khoroshevskyi
   3. Aaron O’Brien
   4. Rafał Stepień
   5. Alip Arslan
   6. Nathan C. Sheffield

   Reviewed by GigaScience

2. Omada: robust clustering of transcriptomes through multiple testing

   This article has 7 authors:

   1. Sokratis Kariotis
   2. Pei Fang Tan
   3. Haiping Lu
   4. Christopher J Rhodes
   5. Martin R Wilkins
   6. Allan Lawrie
   7. Dennis Wang

   Reviewed by GigaScience

3. Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi

   This article has 21 authors:

   1. Riccardo Baroncelli
   2. José F. Cobo-Díaz
   3. Tiziano Benocci
   4. Mao Peng
   5. Evy Battaglia
   6. Sajeet Haridas
   7. William Andreopoulos
   8. Kurt LaButti
   9. Jasmyn Pangilinan
   10. Anna Lipzen
   11. Maxim Koriabine
   12. Diane Bauer
   13. Gaetan Le Floch
   14. Miia R. Mäkelä
   15. Elodie Drula
   16. Bernard Henrissat
   17. Igor V. Grigoriev
   18. Jo Anne Crouch
   19. Ronald P. de Vries
   20. Serenella A. Sukno
   21. Michael R. Thon

   Reviewed by GigaScience

4. Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: Evolutionary insights for horticultural innovation

   This article has 14 authors:

   1. Rafael Moysés Alves
   2. Vinicius A. C. de Abreu
   3. Rafaely Pantoja Oliveira
   4. João Victor dos Anjos Almeida
   5. Mauro de Medeiros de Oliveira
   6. Saura R. Silva
   7. Alexandre R. Paschoal
   8. Sintia S. de Almeida
   9. Pedro A. F. de Souza
   10. Jesus A. Ferro
   11. Vitor F. O. Miranda
   12. Antonio Figueira
   13. Douglas S. Domingues
   14. Alessandro M. Varani

   Reviewed by GigaScience

5. ntsm: an alignment-free, ultra-low-coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection

   This article has 4 authors:

   1. Justin Chu
   2. Jiazhen Rong
   3. Xiaowen Feng
   4. Heng Li

   Reviewed by GigaScience

6. Exploring polymorphic interspecies structural variants in Eucalyptus: Unravelling Their Role in Reproductive Isolation and Adaptive Divergence

   This article has 7 authors:

   1. Scott Ferguson
   2. Ashley Jones
   3. Kevin Murray
   4. Rose L. Andrew
   5. Helen Bothwell
   6. Benjamin Schwessinger
   7. Justin Borevitz

   Reviewed by GigaScience

7. LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome

   This article has 10 authors:

   1. Chao Yang
   2. Zhenmiao Zhang
   3. Yufen Huang
   4. Xuefeng Xie
   5. Herui Liao
   6. Jin Xiao
   7. Werner Pieter Veldsman
   8. Kejing Yin
   9. Xiaodong Fang
   10. Lu Zhang

   Reviewed by GigaScience

8. Hecatomb: An End-to-End Research Platform for Viral Metagenomics

   This article has 10 authors:

   1. Michael J. Roach
   2. Sarah J. Beecroft
   3. Kathie A. Mihindukulasuriya
   4. Leran Wang
   5. Anne Paredes
   6. Kara Henry-Cocks
   7. Lais Farias Oliveira Lima
   8. Elizabeth A. Dinsdale
   9. Robert A. Edwards
   10. Scott A. Handley

   Reviewed by GigaScience

9. IPEV: identification of prokaryotic and eukaryotic virus-derived sequences in virome using deep learning

   This article has 9 authors:

   1. Hengchuang Yin
   2. Shufang Wu
   3. Jie Tan
   4. Qian Guo
   5. Mo Li
   6. Jinyuan Guo
   7. Yaqi Wang
   8. Xiaoqing Jiang
   9. Huaiqiu Zhu

   Reviewed by GigaScience

10. Korea4K: whole genome sequences of 4,157 Koreans with 107 phenotypes derived from extensive health check-ups

    This article has 30 authors:

    1. Sungwon Jeon
    2. Hansol Choi
    3. Yeonsu Jeon
    4. Whan-Hyuk Choi
    5. Hyunjoo Choi
    6. Kyungwhan An
    7. Hyojung Ryu
    8. Jihun Bhak
    9. Hyeonjae Lee
    10. Yoonsung Kwon
    11. Sukyeon Ha
    12. Yeo Jin Kim
    13. Asta Blazyte
    14. Changjae Kim
    15. Yeonkyung Kim
    16. Younghui Kang
    17. Yeong Ju Woo
    18. Chanyoung Lee
    19. Jeongwoo Seo
    20. Changhan Yoon
    21. Dan Bolser
    22. Orsolya Biro
    23. Eun-Seok Shin
    24. Byung Chul Kim
    25. Seon-Young Kim
    26. Ji-Hwan Park
    27. Jongbum Jeon
    28. Dooyoung Jung
    29. Semin Lee
    30. Jong Bhak

    Reviewed by GigaScience