GigaScience

Latest preprint reviews

1. First chromosome-level genome assembly of the colonial tunicate Botryllus schlosseri

   This article has 10 authors:

   1. Olivier De Thier
   2. Mohammed M.Tawfeeq
   3. Roland Faure
   4. Marie Lebel
   5. Philippe Dru
   6. Simon Blanchoud
   7. Alexandre Alié
   8. Federico D. Brown
   9. Jean-François Flot
   10. Stefano Tiozzo

   Reviewed by GigaScience

2. Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence

   This article has 20 authors:

   1. Larissa S. Arantes
   2. Tom Brown
   3. Diego De Panis
   4. Scott D. Whiting
   5. Erin L. LaCasella
   6. Gabriella A. Carvajal
   7. Adam Kennedy
   8. Deana Edmunds
   9. Blair P. Bentley
   10. Jennifer Balacco
   11. Conor Whelan
   12. Nivesh Jain
   13. Tatiana Tilley
   14. Brian O’Toole
   15. Patrick Traore
   16. Erich D. Jarvis
   17. Oliver Berry
   18. Peter H. Dutton
   19. Lisa M. Komoroske
   20. Camila J. Mazzoni

   Reviewed by GigaScience

3. CNSistent integration and feature extraction from somatic copy number profiles

   This article has 2 authors:

   1. Adam Streck
   2. Roland F. Schwarz

   Reviewed by GigaScience

4. Using synthetic RNA to benchmark poly(A) length inference from direct RNA sequencing

   This article has 8 authors:

   1. Jessie J -Y Chang
   2. Xuan Yang
   3. Haotian Teng
   4. Jianshu Zhang
   5. Benjamin Reames
   6. Shuxin Zhang
   7. Vincent Corbin
   8. Lachlan J M Coin

   Reviewed by GigaScience

5. The Open Pediatric Cancer Project

   This article has 49 authors:

   1. Zhuangzhuang Geng
   2. Eric Wafula
   3. Ryan J Corbett
   4. Yuanchao Zhang
   5. Run Jin
   6. Krutika S Gaonkar
   7. Sangeeta Shukla
   8. Komal S Rathi
   9. Dave Hill
   10. Aditya Lahiri
   11. Daniel P Miller
   12. Alex Sickler
   13. Kelsey Keith
   14. Christopher Blackden
   15. Antonia Chroni
   16. Miguel A Brown
   17. Adam A Kraya
   18. Kaylyn L Clark
   19. Brian R Rood
   20. Adam C Resnick
   21. Nicholas Van Kuren
   22. John M Maris
   23. Alvin Farrel
   24. Mateusz P Koptyra
   25. Gerri R Trooskin
   26. Noel Coleman
   27. Yuankun Zhu
   28. Stephanie Stefankiewicz
   29. Zied Abdullaev
   30. Asif T Chinwalla
   31. Mariarita Santi
   32. Ammar S Naqvi
   33. Jennifer L Mason
   34. Carl J Koschmann
   35. Xiaoyan Huang
   36. Sharon J Diskin
   37. Kenneth Aldape
   38. Bailey K Farrow
   39. Weiping Ma
   40. Bo Zhang
   41. Brian M Ennis
   42. Sarah Tasian
   43. Saksham Phul
   44. Matthew R Lueder
   45. Chuwei Zhong
   46. Joseph M Dybas
   47. Pei Wang
   48. Deanne Taylor
   49. Jo Lynne Rokita

   Reviewed by GigaScience

6. Nanopore- and AI-empowered microbial viability inference

   This article has 19 authors:

   1. Harika Ürel
   2. Sabrina Benassou
   3. Hanna Marti
   4. Tim Reska
   5. Ela Sauerborn
   6. Yuri Pinheiro Alves De Souza
   7. Albert Perlas
   8. Enrique Rayo
   9. Michael Biggel
   10. Stefan Kesselheim
   11. Nicole Borel
   12. Edward J Martin
   13. Constanza B Venegas
   14. Michael Schloter
   15. Kathrin Schröder
   16. Jana Mittelstrass
   17. Simone Prospero
   18. James M Ferguson
   19. Lara Urban

   Reviewed by GigaScience

7. A comprehensive water buffalo pangenome reveals extensive structural variation linked to population specific signatures of selection

   This article has 8 authors:

   1. Fazeela Arshad
   2. Siddharth Jayaraman
   3. Andrea Talenti
   4. Rachel Owen
   5. Muhammad Mohsin
   6. Shahid Mansoor
   7. Muhammad Asif
   8. James Prendergast

   Reviewed by GigaScience

8. SPEX: A modular end-to-end platform for high-plex tissue spatial omics analysis

   This article has 23 authors:

   1. Xiao Li
   2. Ximo Pechuan-Jorge
   3. Tyler Risom
   4. Conrad Foo
   5. Alexander Prilipko
   6. Artem Zubkov
   7. Caleb Chan
   8. Patrick Chang
   9. Frank Peale
   10. James Ziai
   11. Sandra Rost
   12. Derrek Hibar
   13. Lisa McGinnis
   14. Evgeniy Tabatsky
   15. Xin Ye
   16. Hector Corrada Bravo
   17. Zhen Shi
   18. Malgorzata Nowicka
   19. Jon Scherdin
   20. James Cowan
   21. Jennifer Giltnane
   22. Darya Orlova
   23. Rajiv Jesudason

   Reviewed by GigaScience

9. Comparing Linear and Nonlinear Finite Element Models of Vertebral Strength Across the Thoracolumbar Spine: A Benchmark from Density-Calibrated Computed Tomography

   This article has 3 authors:

   1. Matthias Walle
   2. Bryn E. Matheson
   3. Steven K. Boyd

   Reviewed by GigaScience

10. WaveSeekerNet: Accurate Prediction of Influenza A Virus Subtypes and Host Source Using Attention-Based Deep Learning

    This article has 9 authors:

    1. Hoang-Hai Nguyen
    2. Josip Rudar
    3. Nathaniel Lesperance
    4. Oksana Vernygora
    5. Graham W. Taylor
    6. Chad Laing
    7. David Lapen
    8. Carson K. Leung
    9. Oliver Lung

    Reviewed by GigaScience