GigaScience

Latest preprint reviews

1. A comprehensive water buffalo pangenome reveals extensive structural variation linked to population specific signatures of selection

   This article has 8 authors:

   1. Fazeela Arshad
   2. Siddharth Jayaraman
   3. Andrea Talenti
   4. Rachel Owen
   5. Muhammad Mohsin
   6. Shahid Mansoor
   7. Muhammad Asif
   8. James Prendergast

   Reviewed by GigaScience

2. SPEX: A modular end-to-end platform for high-plex tissue spatial omics analysis

   This article has 23 authors:

   1. Xiao Li
   2. Ximo Pechuan-Jorge
   3. Tyler Risom
   4. Conrad Foo
   5. Alexander Prilipko
   6. Artem Zubkov
   7. Caleb Chan
   8. Patrick Chang
   9. Frank Peale
   10. James Ziai
   11. Sandra Rost
   12. Derrek Hibar
   13. Lisa McGinnis
   14. Evgeniy Tabatsky
   15. Xin Ye
   16. Hector Corrada Bravo
   17. Zhen Shi
   18. Malgorzata Nowicka
   19. Jon Scherdin
   20. James Cowan
   21. Jennifer Giltnane
   22. Darya Orlova
   23. Rajiv Jesudason

   Reviewed by GigaScience

3. Comparing Linear and Nonlinear Finite Element Models of Vertebral Strength Across the Thoracolumbar Spine: A Benchmark from Density-Calibrated Computed Tomography

   This article has 3 authors:

   1. Matthias Walle
   2. Bryn E. Matheson
   3. Steven K. Boyd

   Reviewed by GigaScience

4. WaveSeekerNet: Accurate Prediction of Influenza A Virus Subtypes and Host Source Using Attention-Based Deep Learning

   This article has 9 authors:

   1. Hoang-Hai Nguyen
   2. Josip Rudar
   3. Nathaniel Lesperance
   4. Oksana Vernygora
   5. Graham W. Taylor
   6. Chad Laing
   7. David Lapen
   8. Carson K. Leung
   9. Oliver Lung

   Reviewed by GigaScience

5. A telomere to telomere phased genome assembly and annotation for the Australian central bearded dragon Pogona vitticeps

   This article has 18 authors:

   1. Hardip R. Patel
   2. Kirat Alreja
   3. Andre L.M. Reis
   4. J King Chang
   5. Zahra A. Chew
   6. Hyungtaek Jung
   7. Jillian M. Hammond
   8. Ira W. Deveson
   9. Aurora Ruiz-Herrera
   10. Laia Marin-Gual
   11. Clare E. Holleley
   12. Xiuwen Zhang
   13. Nicholas C. Lister
   14. Sarah Whiteley
   15. Lei Xiong
   16. Duminda S.B. Dissanayake
   17. Paul D. Waters
   18. Arthur Georges

   Reviewed by GigaScience

6. Telomere-to-telomere African wild rice ( Oryza longistaminata ) reference genome reveals segmental and structural variation

   This article has 23 authors:

   1. Xuanmin Guang
   2. Jingnan Yang
   3. Shilai Zhang
   4. Fei Guo
   5. Linzhou Li
   6. Xiaoping Lian
   7. Tao Zeng
   8. Chongyang Cai
   9. Fushu Liu
   10. Zhihao Li
   11. Yangzi Hu
   12. Dongming Fang
   13. Weiming He
   14. Sunil Kumar Sahu
   15. Wangsheng Li
   16. Haorong Lu
   17. Yuxiang Li
   18. Huan Liu
   19. Xun Xu
   20. Ying Gu
   21. Fengyi Hu
   22. Yuliang Dong
   23. Tong Wei

   Reviewed by GigaScience

7. A near-complete genome assembly of the bearded dragon Pogona vitticeps provides insights into the origin of Pogona sex chromosomes

   This article has 24 authors:

   1. Qunfei Guo
   2. Youliang Pan
   3. Wei Dai
   4. Fei Guo
   5. Tao Zeng
   6. Wanyi Chen
   7. Yaping Mi
   8. Yanshu Zhang
   9. Shuaizhen Shi
   10. Wei Jiang
   11. Huimin Cai
   12. Beiying Wu
   13. Yang Zhou
   14. Ying Wang
   15. Chentao Yang
   16. Xiao Shi
   17. Xu Yan
   18. Junyi Chen
   19. Chongyang Cai
   20. Jingnan Yang
   21. Xun Xu
   22. Ying Gu
   23. Yuliang Dong
   24. Qiye Li

   Reviewed by GigaScience

8. SeuratExtend: Streamlining Single-Cell RNA-Seq Analysis Through an Integrated and Intuitive Framework

   This article has 4 authors:

   1. Yichao Hua
   2. Linqian Weng
   3. Fang Zhao
   4. Florian Rambow

   Reviewed by GigaScience

9. Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot

   This article has 11 authors:

   1. Oscar Aramburu
   2. Belén Gómez-Pardo
   3. Paula Rodríguez-Villamayor
   4. Andrés Blanco-Hortas
   5. Jesús Lamas
   6. Pooran Dewari
   7. Diego Perojil-Morata
   8. Pierre Boudinot
   9. Daniel J Macqueen
   10. Carmen Bouza
   11. Paulino Martínez

   Reviewed by GigaScience

10. CellBinDB: a large-scale multimodal annotated dataset for cell segmentation with benchmarking of universal models

    This article has 13 authors:

    1. Can Shi
    2. Jinghong Fan
    3. Zhonghan Deng
    4. Huanlin Liu
    5. Qiang Kang
    6. Yumei Li
    7. Jing Guo
    8. Jingwen Wang
    9. Jinjiang Gong
    10. Sha Liao
    11. Ao Chen
    12. Ying Zhang
    13. Mei Li

    Reviewed by GigaScience