GigaScience

Latest preprint reviews

1. Deciphering Cancer Genomes with GenomeSpy: A Grammar-Based Visualization Toolkit

   This article has 13 authors:

   1. Kari Lavikka
   2. Jaana Oikkonen
   3. Yilin Li
   4. Taru Muranen
   5. Giulia Micoli
   6. Giovanni Marchi
   7. Alexandra Lahtinen
   8. Kaisa Huhtinen
   9. Rainer Lehtonen
   10. Sakari Hietanen
   11. Johanna Hynninen
   12. Anni Virtanen
   13. Sampsa Hautaniemi

   Reviewed by GigaScience

2. Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data

   This article has 6 authors:

   1. Eva Aßmann
   2. Shelesh Agrawal
   3. Laura Orschler
   4. Sindy Böttcher
   5. Susanne Lackner
   6. Martin Hölzer

   Reviewed by GigaScience

3. Unveiling Vertebrate Development Dynamics in Frog Xenopus laevis using Micro-CT Imaging

   This article has 9 authors:

   1. Laznovsky Jakub
   2. Kavkova Michaela
   3. Reis Alice
   4. Robovska-Havelkova Pavla
   5. Krivanek Jan
   6. Zikmund Tomas
   7. Kaiser Jozef
   8. Buchtova Marcela
   9. Harnos Jakub

   Reviewed by GigaScience

4. gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes

   This article has 2 authors:

   1. Muzaffer Arıkan
   2. Thilo Muth

   Reviewed by GigaScience

5. PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata

   This article has 6 authors:

   1. Nathan J. LeRoy
   2. Oleksandr Khoroshevskyi
   3. Aaron O’Brien
   4. Rafał Stepień
   5. Alip Arslan
   6. Nathan C. Sheffield

   Reviewed by GigaScience

6. Omada: Robust clustering of transcriptomes through multiple testing

   This article has 7 authors:

   1. Sokratis Kariotis
   2. Tan Pei Fang
   3. Haiping Lu
   4. Chris Rhodes
   5. Martin Wilkins
   6. Allan Lawrie
   7. Dennis Wang

   Reviewed by GigaScience

7. Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi

   This article has 21 authors:

   1. Riccardo Baroncelli
   2. José F. Cobo-Díaz
   3. Tiziano Benocci
   4. Mao Peng
   5. Evy Battaglia
   6. Sajeet Haridas
   7. William Andreopoulos
   8. Kurt LaButti
   9. Jasmyn Pangilinan
   10. Anna Lipzen
   11. Maxim Koriabine
   12. Diane Bauer
   13. Gaetan Le Floch
   14. Miia R. Mäkelä
   15. Elodie Drula
   16. Bernard Henrissat
   17. Igor V. Grigoriev
   18. Jo Anne Crouch
   19. Ronald P. de Vries
   20. Serenella A. Sukno
   21. Michael R. Thon

   Reviewed by GigaScience

8. Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: Evolutionary insights for horticultural innovation

   This article has 14 authors:

   1. Rafael Moysés Alves
   2. Vinicius A. C. de Abreu
   3. Rafaely Pantoja Oliveira
   4. João Victor dos Anjos Almeida
   5. Mauro de Medeiros de Oliveira
   6. Saura R. Silva
   7. Alexandre R. Paschoal
   8. Sintia S. de Almeida
   9. Pedro A. F. de Souza
   10. Jesus A. Ferro
   11. Vitor F. O. Miranda
   12. Antonio Figueira
   13. Douglas S. Domingues
   14. Alessandro M. Varani

   Reviewed by GigaScience

9. ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection

   This article has 4 authors:

   1. Justin Chu
   2. Jiazhen Rong
   3. Xiaowen Feng
   4. Heng Li

   Reviewed by GigaScience

10. Exploring polymorphic interspecies structural variants in Eucalyptus: Unravelling Their Role in Reproductive Isolation and Adaptive Divergence

    This article has 7 authors:

    1. Scott Ferguson
    2. Ashley Jones
    3. Kevin Murray
    4. Rose L. Andrew
    5. Helen Bothwell
    6. Benjamin Schwessinger
    7. Justin Borevitz

    Reviewed by GigaScience