GigaScience

Latest preprint reviews

1. 4D Single-Cell Spatial Transcriptomics Reveals Dynamic Morphogenetic Gradients and Regenerative Domains in Planarians

   This article has 37 authors:

   1. Kai Han
   2. Yue Chen
   3. Yao Li
   4. Lidong Guo
   5. Yuxiaofei Wang
   6. Xiawei Liu
   7. Yaru Lin
   8. Zhi Huang
   9. Qun Liu
   10. Wenjie Guo
   11. Rui Zhang
   12. Wandong Zhao
   13. Langchao Liang
   14. Xiaoyu Wei
   15. Li Zhou
   16. Xuebin Mao
   17. Jiaqi Wang
   18. Weijian Wu
   19. Hongwei Pan
   20. Tao Yang
   21. He Zhang
   22. Xiaoshan Su
   23. Shanshan Liu
   24. Wenwei Zhang
   25. Longqi Liu
   26. Søren Tvorup Christensen
   27. Jifeng Fei
   28. Xin Liu
   29. Guangyi Fan
   30. Hanbo Li
   31. Ying Gu
   32. Jian Wang
   33. Huanming Yang
   34. Gang Pei
   35. Xun Xu
   36. An Zeng
   37. Mengyang Xu

   Reviewed by GigaScience

2. PathoFact 2.0: An Integrative Pipeline for Predicting Antimicrobial Resistance Genes, Virulence Factors, Toxins and Biosynthetic Gene Clusters in Metagenomes

   This article has 6 authors:

   1. Júlia Ortís Sunyer
   2. Luis F. Delgado
   3. Oskar Hickl
   4. Cedric C. Laczny
   5. Patrick May
   6. Paul Wilmes

   Reviewed by GigaScience

3. FEDRANN: effective long-read overlap detection based on dimensionality reduction and approximate nearest neighbors

   This article has 15 authors:

   1. Jia-Yuan Zhang
   2. Changjiu Miao
   3. Teng Qiu
   4. Junyi He
   5. Wenqi Cao
   6. Wei Lin
   7. Xiaoshuang Xia
   8. Lei He
   9. Chunlei Yang
   10. Yuhui Sun
   11. Tao Zeng
   12. Yuxiang Li
   13. Xun Xu
   14. Yijun Ruan
   15. Yuliang Dong

   Reviewed by GigaScience

4. METRIN-KG: A knowledge graph integrating plant metabolites, traits, and biotic interactions

   This article has 4 authors:

   1. Disha Tandon
   2. Tarcisio Mendes De Farias
   3. Pierre-Marie Allard
   4. Emmanuel Defossez

   Reviewed by GigaScience

5. HVRLocator: a computationally efficient tool for identifying hypervariable regions in large 16S rRNA datasets

   This article has 7 authors:

   1. Clara Arboleda-Baena
   2. Felipe Borim Corrêa
   3. João Pedro Saraiva
   4. Santiago Castillo-Rivadeneira
   5. Jonas Coelho Kasmanas
   6. Antonis Chatzinotas
   7.  Stephanie D Jurburg

   Reviewed by GigaScience

6. MicroFinder: conserved gene-set mapping and assembly ordering for manual curation of bird dot microchromosomes

   This article has 4 authors:

   1. Thomas C Mathers
   2. Michael Paulini
   3. Cibele G Sotero-Caio
   4. Jonathan M D Wood

   Reviewed by GigaScience

7. GEfetch2R : fetching single-cell/bulk RNA-seq data from public repositories to R and benchmarking the subsequent format conversion tools

   This article has 3 authors:

   1. Yabing Song
   2. Jianbin Wang
   3. Jiaxin Gao

   Reviewed by GigaScience

8. Patterns of aDNA damage through time and environments—lessons from herbarium specimens

   This article has 12 authors:

   1. Stefano Porrelli
   2. Alice Fornasiero
   3. Hong Phuong Le
   4. Wenzhe Yin
   5. María E Navarrete Rodríguez
   6. Nahed Mohammed
   7. Axel Himmelbach
   8. Andrew C Clarke
   9. Nils Stein
   10. Paul J Kersey
   11. Rod A Wing
   12. Rafal M Gutaker

   Reviewed by GigaScience

9. Characterizing a species-rich and understudied tropical insect fauna using DNA barcoding

   This article has 11 authors:

   1. David R Hemprich-Bennett
   2. Ezekiel Donkor
   3. Bernard Adams
   4. Naana Afua Acquaah
   5. Eva D Ofori
   6. Samuel Anie-Amoah
   7. Abigail Bailey
   8. Hugh Charles J Godfray
   9. Owen T Lewis
   10. Fred Aboagye-Antwi
   11. Talya D Hackett

   Reviewed by GigaScience

10. MADRe: Strain-level metagenomic classification through assembly-driven database reduction

    This article has 4 authors:

    1. Josipa Lipovac
    2. Mile Šikić
    3. Riccardo Vicedomini
    4. Krešimir Križanović

    Reviewed by GigaScience