GigaScience

Latest preprint reviews

1. Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

   This article has 2 authors:

   1. Zheng Li
   2. Michael S Barker

   Reviewed by GigaScience

2. HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

   This article has 14 authors:

   1. Jerven Bolleman
   2. Edouard de Castro
   3. Delphine Baratin
   4. Sebastien Gehant
   5. Beatrice A Cuche
   6. Andrea H Auchincloss
   7. Elisabeth Coudert
   8. Chantal Hulo
   9. Patrick Masson
   10. Ivo Pedruzzi
   11. Catherine Rivoire
   12. Ioannis Xenarios
   13. Nicole Redaschi
   14. Alan Bridge

   Reviewed by GigaScience

3. The Data Tags Suite (DATS) model for discovering data access and use requirements

   This article has 4 authors:

   1. George Alter
   2. Alejandra Gonzalez-Beltran
   3. Lucila Ohno-Machado
   4. Philippe Rocca-Serra

   Reviewed by GigaScience

4. Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

   This article has 10 authors:

   1. Stephen J Bush
   2. Dona Foster
   3. David W Eyre
   4. Emily L Clark
   5. Nicola De Maio
   6. Liam P Shaw
   7. Nicole Stoesser
   8. Tim E A Peto
   9. Derrick W Crook
   10. A Sarah Walker

   Reviewed by GigaScience

5. Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing

   This article has 7 authors:

   1. Miranda E Pitt
   2. Son H Nguyen
   3. Tânia P S Duarte
   4. Haotian Teng
   5. Mark A T Blaskovich
   6. Matthew A Cooper
   7. Lachlan J M Coin

   Reviewed by GigaScience

6. Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?

   This article has 6 authors:

   1. Mitsutaka Kadota
   2. Osamu Nishimura
   3. Hisashi Miura
   4. Kaori Tanaka
   5. Ichiro Hiratani
   6. Shigehiro Kuraku

   Reviewed by GigaScience

7. The draft nuclear genome assembly of Eucalyptus pauciflora : a pipeline for comparing de novo assemblies

   This article has 7 authors:

   1. Weiwen Wang
   2. Ashutosh Das
   3. David Kainer
   4. Miriam Schalamun
   5. Alejandro Morales-Suarez
   6. Benjamin Schwessinger
   7. Robert Lanfear

   Reviewed by GigaScience

8. Assessment of human diploid genome assembly with 10x Linked-Reads data

   This article has 4 authors:

   1. Lu Zhang
   2. Xin Zhou
   3. Ziming Weng
   4. Arend Sidow

   Reviewed by GigaScience

9. High-throughput phenotyping with deep learning gives insight into the genetic architecture of flowering time in wheat

   This article has 6 authors:

   1. Xu Wang
   2. Hong Xuan
   3. Byron Evers
   4. Sandesh Shrestha
   5. Robert Pless
   6. Jesse Poland

   Reviewed by GigaScience

10. RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements

    This article has 3 authors:

    1. Ekaterina Osipova
    2. Nikolai Hecker
    3. Michael Hiller

    Reviewed by GigaScience