GigaScience

Latest preprint reviews

1. DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data

   This article has 3 authors:

   1. Lukas M Simon
   2. Fangfang Yan
   3. Zhongming Zhao

   Reviewed by GigaScience

2. iGenomics: Comprehensive DNA sequence analysis on your Smartphone

   This article has 4 authors:

   1. Aspyn Palatnick
   2. Bin Zhou
   3. Elodie Ghedin
   4. Michael C Schatz

   Reviewed by GigaScience

3. Accurate assembly of the olive baboon ( Papio anubis ) genome using long-read and Hi-C data

   This article has 11 authors:

   1. Sanjit Singh Batra
   2. Michal Levy-Sakin
   3. Jacqueline Robinson
   4. Joseph Guillory
   5. Steffen Durinck
   6. Tauras P Vilgalys
   7. Pui-Yan Kwok
   8. Laura A Cox
   9. Somasekar Seshagiri
   10. Yun S Song
   11. Jeffrey D Wall

   Reviewed by GigaScience

4. Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology

   This article has 3 authors:

   1. Christina Weißbecker
   2. Beatrix Schnabel
   3. Anna Heintz-Buschart

   Reviewed by GigaScience

5. GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets

   This article has 9 authors:

   1. Miroslav Kratochvíl
   2. Oliver Hunewald
   3. Laurent Heirendt
   4. Vasco Verissimo
   5. Jiří Vondrášek
   6. Venkata P Satagopam
   7. Reinhard Schneider
   8. Christophe Trefois
   9. Markus Ollert

   Reviewed by GigaScience

6. Correcting for experiment-specific variability in expression compendia can remove underlying signals

   This article has 5 authors:

   1. Alexandra J Lee
   2. YoSon Park
   3. Georgia Doing
   4. Deborah A Hogan
   5. Casey S Greene

   Reviewed by GigaScience

7. A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

   This article has 23 authors:

   1. Mehmet Tekman
   2. Bérénice Batut
   3. Alexander Ostrovsky
   4. Christophe Antoniewski
   5. Dave Clements
   6. Fidel Ramirez
   7. Graham J Etherington
   8. Hans-Rudolf Hotz
   9. Jelle Scholtalbers
   10. Jonathan R Manning
   11. Lea Bellenger
   12. Maria A Doyle
   13. Mohammad Heydarian
   14. Ni Huang
   15. Nicola Soranzo
   16. Pablo Moreno
   17. Stefan Mautner
   18. Irene Papatheodorou
   19. Anton Nekrutenko
   20. James Taylor
   21. Daniel Blankenberg
   22. Rolf Backofen
   23. Björn Grüning

   Reviewed by GigaScience

8. A map of tumor–host interactions in glioma at single-cell resolution

   This article has 16 authors:

   1. Francesca Pia Caruso
   2. Luciano Garofano
   3. Fulvio D'Angelo
   4. Kai Yu
   5. Fuchou Tang
   6. Jinzhou Yuan
   7. Jing Zhang
   8. Luigi Cerulo
   9. Stefano M Pagnotta
   10. Davide Bedognetti
   11. Peter A Sims
   12. Mario Suvà
   13. Xiao-Dong Su
   14. Anna Lasorella
   15. Antonio Iavarone
   16. Michele Ceccarelli

   Reviewed by GigaScience

9. Gene-set Enrichment with Mathematical Biology (GEMB)

   This article has 5 authors:

   1. Amy L Cochran
   2. Kenneth J Nieser
   3. Daniel B Forger
   4. Sebastian Zöllner
   5. Melvin G McInnis

   Reviewed by GigaScience

10. Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

    This article has 6 authors:

    1. Damien Courtine
    2. Jan Provaznik
    3. Jerome Reboul
    4. Guillaume Blanc
    5. Vladimir Benes
    6. Jonathan J Ewbank

    Reviewed by GigaScience