GigaScience

Latest preprint reviews

1. A haplotype-resolved, de novo genome assembly for the wood tiger moth ( Arctia plantaginis ) through trio binning

   This article has 11 authors:

   1. Eugenie C Yen
   2. Shane A McCarthy
   3. Juan A Galarza
   4. Tomas N Generalovic
   5. Sarah Pelan
   6. Petr Nguyen
   7. Joana I Meier
   8. Ian A Warren
   9. Johanna Mappes
   10. Richard Durbin
   11. Chris D Jiggins

   Reviewed by GigaScience

2. Scientometric trends for coronaviruses and other emerging viral infections

   This article has 3 authors:

   1. Dima Kagan
   2. Jacob Moran-Gilad
   3. Michael Fire

   Reviewed by GigaScience, ScreenIT

3. Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network

   This article has 5 authors:

   1. Xiang Zhou
   2. Hua Chai
   3. Huiying Zhao
   4. Ching-Hsing Luo
   5. Yuedong Yang

   Reviewed by GigaScience

4. Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

   This article has 4 authors:

   1. Kirill Kryukov
   2. Mahoko Takahashi Ueda
   3. So Nakagawa
   4. Tadashi Imanishi

   Reviewed by GigaScience

5. Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of diploid Aegilops tauschii and hexaploid wheat

   This article has 6 authors:

   1. Fu-Hao Lu
   2. Neil McKenzie
   3. Laura-Jayne Gardiner
   4. Ming-Cheng Luo
   5. Anthony Hall
   6. Michael W Bevan

   Reviewed by GigaScience

6. Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish

   This article has 7 authors:

   1. Lisa K Johnson
   2. Ruta Sahasrabudhe
   3. James Anthony Gill
   4. Jennifer L Roach
   5. Lutz Froenicke
   6. C Titus Brown
   7. Andrew Whitehead

   Reviewed by GigaScience

7. CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

   This article has 5 authors:

   1. Victor A Padilha
   2. Omer S Alkhnbashi
   3. Shiraz A Shah
   4. André C P L F de Carvalho
   5. Rolf Backofen

   Reviewed by GigaScience

8. An improved pig reference genome sequence to enable pig genetics and genomics research

   This article has 40 authors:

   1. Amanda Warr
   2. Nabeel Affara
   3. Bronwen Aken
   4. Hamid Beiki
   5. Derek M Bickhart
   6. Konstantinos Billis
   7. William Chow
   8. Lel Eory
   9. Heather A Finlayson
   10. Paul Flicek
   11. Carlos G Girón
   12. Darren K Griffin
   13. Richard Hall
   14. Greg Hannum
   15. Thibaut Hourlier
   16. Kerstin Howe
   17. David A Hume
   18. Osagie Izuogu
   19. Kristi Kim
   20. Sergey Koren
   21. Haibou Liu
   22. Nancy Manchanda
   23. Fergal J Martin
   24. Dan J Nonneman
   25. Rebecca E O'Connor
   26. Adam M Phillippy
   27. Gary A Rohrer
   28. Benjamin D Rosen
   29. Laurie A Rund
   30. Carole A Sargent
   31. Lawrence B Schook
   32. Steven G Schroeder
   33. Ariel S Schwartz
   34. Ben M Skinner
   35. Richard Talbot
   36. Elizabeth Tseng
   37. Christopher K Tuggle
   38. Mick Watson
   39. Timothy P L Smith
   40. Alan L Archibald

   Reviewed by GigaScience

9. Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

   This article has 6 authors:

   1. Saber Hafezqorani
   2. Chen Yang
   3. Theodora Lo
   4. Ka Ming Nip
   5. René L Warren
   6. Inanc Birol

   Reviewed by GigaScience

10. SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat

    This article has 10 authors:

    1. Wenxi Wang
    2. Zihao Wang
    3. Xintong Li
    4. Zhongfu Ni
    5. Zhaorong Hu
    6. Mingming Xin
    7. Huiru Peng
    8. Yingyin Yao
    9. Qixin Sun
    10. Weilong Guo

    Reviewed by GigaScience