GigaScience

Latest preprint reviews

1. MB-GAN: Microbiome Simulation via Generative Adversarial Network

   This article has 8 authors:

   1. Ruichen Rong
   2. Shuang Jiang
   3. Lin Xu
   4. Guanghua Xiao
   5. Yang Xie
   6. Dajiang J Liu
   7. Qiwei Li
   8. Xiaowei Zhan

   Reviewed by GigaScience

2. Lilikoi V2.0: a deep learning–enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data

   This article has 6 authors:

   1. Xinying Fang
   2. Yu Liu
   3. Zhijie Ren
   4. Yuheng Du
   5. Qianhui Huang
   6. Lana X Garmire

   Reviewed by GigaScience

3. Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses

   This article has 13 authors:

   1. Nikhil Bhagwat
   2. Amadou Barry
   3. Erin W Dickie
   4. Shawn T Brown
   5. Gabriel A Devenyi
   6. Koji Hatano
   7. Elizabeth DuPre
   8. Alain Dagher
   9. Mallar Chakravarty
   10. Celia M T Greenwood
   11. Bratislav Misic
   12. David N Kennedy
   13. Jean-Baptiste Poline

   Reviewed by GigaScience

4. Streamlining data-intensive biology with workflow systems

   This article has 8 authors:

   1. Taylor Reiter
   2. Phillip T Brooks†
   3. Luiz Irber†
   4. Shannon E K Joslin†
   5. Charles M Reid†
   6. Camille Scott†
   7. C Titus Brown
   8. N Tessa Pierce-Ward

   Reviewed by GigaScience

5. BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

   This article has 4 authors:

   1. Satria A Kautsar
   2. Justin J J van der Hooft
   3. Dick de Ridder
   4. Marnix H Medema

   Reviewed by GigaScience

6. Genome diversity in Ukraine

   This article has 30 authors:

   1. Taras K Oleksyk
   2. Walter W Wolfsberger
   3. Alexandra M Weber
   4. Khrystyna Shchubelka
   5. Olga T Oleksyk
   6. Olga Levchuk
   7. Alla Patrus
   8. Nelya Lazar
   9. Stephanie O Castro-Marquez
   10. Yaroslava Hasynets
   11. Patricia Boldyzhar
   12. Mikhailo Neymet
   13. Alina Urbanovych
   14. Viktoriya Stakhovska
   15. Kateryna Malyar
   16. Svitlana Chervyakova
   17. Olena Podoroha
   18. Natalia Kovalchuk
   19. Juan L Rodriguez-Flores
   20. Weichen Zhou
   21. Sarah Medley
   22. Fabia Battistuzzi
   23. Ryan Liu
   24. Yong Hou
   25. Siru Chen
   26. Huanming Yang
   27. Meredith Yeager
   28. Michael Dean
   29. Ryan E Mills
   30. Volodymyr Smolanka

   Reviewed by GigaScience

7. Tool recommender system in Galaxy using deep learning

   This article has 4 authors:

   1. Anup Kumar
   2. Helena Rasche
   3. Björn Grüning
   4. Rolf Backofen

   Reviewed by GigaScience

8. SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

   This article has 2 authors:

   1. Matthew D Young
   2. Sam Behjati

   Reviewed by GigaScience

9. Long-read assembly of the Brassica napus reference genome Darmor-bzh

   This article has 20 authors:

   1. Mathieu Rousseau-Gueutin
   2. Caroline Belser
   3. Corinne Da Silva
   4. Gautier Richard
   5. Benjamin Istace
   6. Corinne Cruaud
   7. Cyril Falentin
   8. Franz Boideau
   9. Julien Boutte
   10. Regine Delourme
   11. Gwenaëlle Deniot
   12. Stefan Engelen
   13. Julie Ferreira de Carvalho
   14. Arnaud Lemainque
   15. Loeiz Maillet
   16. Jérôme Morice
   17. Patrick Wincker
   18. France Denoeud
   19. Anne-Marie Chèvre
   20. Jean-Marc Aury

   Reviewed by GigaScience

10. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore

    This article has 14 authors:

    1. Dandan Lang
    2. Shilai Zhang
    3. Pingping Ren
    4. Fan Liang
    5. Zongyi Sun
    6. Guanliang Meng
    7. Yuntao Tan
    8. Xiaokang Li
    9. Qihua Lai
    10. Lingling Han
    11. Depeng Wang
    12. Fengyi Hu
    13. Wen Wang
    14. Shanlin Liu

    Reviewed by GigaScience