GigaScience

Latest preprint reviews

1. SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

   This article has 2 authors:

   1. Matthew D Young
   2. Sam Behjati

   Reviewed by GigaScience

2. Long-read assembly of the Brassica napus reference genome Darmor-bzh

   This article has 20 authors:

   1. Mathieu Rousseau-Gueutin
   2. Caroline Belser
   3. Corinne Da Silva
   4. Gautier Richard
   5. Benjamin Istace
   6. Corinne Cruaud
   7. Cyril Falentin
   8. Franz Boideau
   9. Julien Boutte
   10. Regine Delourme
   11. Gwenaëlle Deniot
   12. Stefan Engelen
   13. Julie Ferreira de Carvalho
   14. Arnaud Lemainque
   15. Loeiz Maillet
   16. Jérôme Morice
   17. Patrick Wincker
   18. France Denoeud
   19. Anne-Marie Chèvre
   20. Jean-Marc Aury

   Reviewed by GigaScience

3. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore

   This article has 14 authors:

   1. Dandan Lang
   2. Shilai Zhang
   3. Pingping Ren
   4. Fan Liang
   5. Zongyi Sun
   6. Guanliang Meng
   7. Yuntao Tan
   8. Xiaokang Li
   9. Qihua Lai
   10. Lingling Han
   11. Depeng Wang
   12. Fengyi Hu
   13. Wen Wang
   14. Shanlin Liu

   Reviewed by GigaScience

4. DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data

   This article has 3 authors:

   1. Lukas M Simon
   2. Fangfang Yan
   3. Zhongming Zhao

   Reviewed by GigaScience

5. iGenomics: Comprehensive DNA sequence analysis on your Smartphone

   This article has 4 authors:

   1. Aspyn Palatnick
   2. Bin Zhou
   3. Elodie Ghedin
   4. Michael C Schatz

   Reviewed by GigaScience

6. Accurate assembly of the olive baboon ( Papio anubis ) genome using long-read and Hi-C data

   This article has 11 authors:

   1. Sanjit Singh Batra
   2. Michal Levy-Sakin
   3. Jacqueline Robinson
   4. Joseph Guillory
   5. Steffen Durinck
   6. Tauras P Vilgalys
   7. Pui-Yan Kwok
   8. Laura A Cox
   9. Somasekar Seshagiri
   10. Yun S Song
   11. Jeffrey D Wall

   Reviewed by GigaScience

7. Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology

   This article has 3 authors:

   1. Christina Weißbecker
   2. Beatrix Schnabel
   3. Anna Heintz-Buschart

   Reviewed by GigaScience

8. GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets

   This article has 9 authors:

   1. Miroslav Kratochvíl
   2. Oliver Hunewald
   3. Laurent Heirendt
   4. Vasco Verissimo
   5. Jiří Vondrášek
   6. Venkata P Satagopam
   7. Reinhard Schneider
   8. Christophe Trefois
   9. Markus Ollert

   Reviewed by GigaScience

9. Correcting for experiment-specific variability in expression compendia can remove underlying signals

   This article has 5 authors:

   1. Alexandra J Lee
   2. YoSon Park
   3. Georgia Doing
   4. Deborah A Hogan
   5. Casey S Greene

   Reviewed by GigaScience

10. A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

    This article has 23 authors:

    1. Mehmet Tekman
    2. Bérénice Batut
    3. Alexander Ostrovsky
    4. Christophe Antoniewski
    5. Dave Clements
    6. Fidel Ramirez
    7. Graham J Etherington
    8. Hans-Rudolf Hotz
    9. Jelle Scholtalbers
    10. Jonathan R Manning
    11. Lea Bellenger
    12. Maria A Doyle
    13. Mohammad Heydarian
    14. Ni Huang
    15. Nicola Soranzo
    16. Pablo Moreno
    17. Stefan Mautner
    18. Irene Papatheodorou
    19. Anton Nekrutenko
    20. James Taylor
    21. Daniel Blankenberg
    22. Rolf Backofen
    23. Björn Grüning

    Reviewed by GigaScience