GigaScience

Latest preprint reviews

1. Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

   This article has 6 authors:

   1. Saber Hafezqorani
   2. Chen Yang
   3. Theodora Lo
   4. Ka Ming Nip
   5. René L Warren
   6. Inanc Birol

   Reviewed by GigaScience

2. SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat

   This article has 10 authors:

   1. Wenxi Wang
   2. Zihao Wang
   3. Xintong Li
   4. Zhongfu Ni
   5. Zhaorong Hu
   6. Mingming Xin
   7. Huiru Peng
   8. Yingyin Yao
   9. Qixin Sun
   10. Weilong Guo

   Reviewed by GigaScience

3. Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity

   This article has 8 authors:

   1. Benjamin B Chu
   2. Kevin L Keys
   3. Christopher A German
   4. Hua Zhou
   5. Jin J Zhou
   6. Eric M Sobel
   7. Janet S Sinsheimer
   8. Kenneth Lange

   Reviewed by GigaScience

4. A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

   This article has 27 authors:

   1. Junhua Li
   2. Huanzi Zhong
   3. Yuliaxis Ramayo-Caldas
   4. Nicolas Terrapon
   5. Vincent Lombard
   6. Gabrielle Potocki-Veronese
   7. Jordi Estellé
   8. Milka Popova
   9. Ziyi Yang
   10. Hui Zhang
   11. Fang Li
   12. Shanmei Tang
   13. Fangming Yang
   14. Weineng Chen
   15. Bing Chen
   16. Jiyang Li
   17. Jing Guo
   18. Cécile Martin
   19. Emmanuelle Maguin
   20. Xun Xu
   21. Huanming Yang
   22. Jian Wang
   23. Lise Madsen
   24. Karsten Kristiansen
   25. Bernard Henrissat
   26. Stanislav D Ehrlich
   27. Diego P Morgavi

   Reviewed by GigaScience

5. parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants

   This article has 11 authors:

   1. Alessandro Petrini
   2. Marco Mesiti
   3. Max Schubach
   4. Marco Frasca
   5. Daniel Danis
   6. Matteo Re
   7. Giuliano Grossi
   8. Luca Cappelletti
   9. Tiziana Castrignanò
   10. Peter N Robinson
   11. Giorgio Valentini

   Reviewed by GigaScience

6. High-quality chromosome-scale assembly of the walnut ( Juglans regia L.) reference genome

   This article has 16 authors:

   1. Annarita Marrano
   2. Monica Britton
   3. Paulo A Zaini
   4. Aleksey V Zimin
   5. Rachael E Workman
   6. Daniela Puiu
   7. Luca Bianco
   8. Erica Adele Di Pierro
   9. Brian J Allen
   10. Sandeep Chakraborty
   11. Michela Troggio
   12. Charles A Leslie
   13. Winston Timp
   14. Abhaya Dandekar
   15. Steven L Salzberg
   16. David B Neale

   Reviewed by GigaScience

7. Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements

   This article has 4 authors:

   1. Morteza Hosseini
   2. Diogo Pratas
   3. Burkhard Morgenstern
   4. Armando J Pinho

   Reviewed by GigaScience

8. EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy

   This article has 6 authors:

   1. Katarzyna Murat
   2. Björn Grüning
   3. Paulina Wiktoria Poterlowicz
   4. Gillian Westgate
   5. Desmond J Tobin
   6. Krzysztof Poterlowicz

   Reviewed by GigaScience

9. Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal

   This article has 10 authors:

   1. Graham J Etherington
   2. Darren Heavens
   3. David Baker
   4. Ashleigh Lister
   5. Rose McNelly
   6. Gonzalo Garcia
   7. Bernardo Clavijo
   8. Iain Macaulay
   9. Wilfried Haerty
   10. Federica Di Palma

   Reviewed by GigaScience

10. Community standards for open cell migration data

    This article has 25 authors:

    1. Alejandra N Gonzalez-Beltran
    2. Paola Masuzzo
    3. Christophe Ampe
    4. Gert-Jan Bakker
    5. Sébastien Besson
    6. Robert H Eibl
    7. Peter Friedl
    8. Matthias Gunzer
    9. Mark Kittisopikul
    10. Sylvia E Le Dévédec
    11. Simone Leo
    12. Josh Moore
    13. Yael Paran
    14. Jaime Prilusky
    15. Philippe Rocca-Serra
    16. Philippe Roudot
    17. Marc Schuster
    18. Gwendolien Sergeant
    19. Staffan Strömblad
    20. Jason R Swedlow
    21. Merijn van Erp
    22. Marleen Van Troys
    23. Assaf Zaritsky
    24. Susanna-Assunta Sansone
    25. Lennart Martens

    Reviewed by GigaScience