GigaScience

Latest preprint reviews

1. Gene-set Enrichment with Mathematical Biology (GEMB)

   This article has 5 authors:

   1. Amy L Cochran
   2. Kenneth J Nieser
   3. Daniel B Forger
   4. Sebastian Zöllner
   5. Melvin G McInnis

   Reviewed by GigaScience

2. Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

   This article has 6 authors:

   1. Damien Courtine
   2. Jan Provaznik
   3. Jerome Reboul
   4. Guillaume Blanc
   5. Vladimir Benes
   6. Jonathan J Ewbank

   Reviewed by GigaScience

3. A haplotype-resolved, de novo genome assembly for the wood tiger moth ( Arctia plantaginis ) through trio binning

   This article has 11 authors:

   1. Eugenie C Yen
   2. Shane A McCarthy
   3. Juan A Galarza
   4. Tomas N Generalovic
   5. Sarah Pelan
   6. Petr Nguyen
   7. Joana I Meier
   8. Ian A Warren
   9. Johanna Mappes
   10. Richard Durbin
   11. Chris D Jiggins

   Reviewed by GigaScience

4. Scientometric Trends for Coronaviruses and Other Emerging Viral Infections

   This article has 3 authors:

   1. Dima Kagan
   2. Jacob Moran-Gilad
   3. Michael Fire

   Reviewed by GigaScience, ScreenIT

5. Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network

   This article has 5 authors:

   1. Xiang Zhou
   2. Hua Chai
   3. Huiying Zhao
   4. Ching-Hsing Luo
   5. Yuedong Yang

   Reviewed by GigaScience

6. Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

   This article has 4 authors:

   1. Kirill Kryukov
   2. Mahoko Takahashi Ueda
   3. So Nakagawa
   4. Tadashi Imanishi

   Reviewed by GigaScience

7. Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of diploid Aegilops tauschii and hexaploid wheat

   This article has 6 authors:

   1. Fu-Hao Lu
   2. Neil McKenzie
   3. Laura-Jayne Gardiner
   4. Ming-Cheng Luo
   5. Anthony Hall
   6. Michael W Bevan

   Reviewed by GigaScience

8. Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish

   This article has 7 authors:

   1. Lisa K Johnson
   2. Ruta Sahasrabudhe
   3. James Anthony Gill
   4. Jennifer L Roach
   5. Lutz Froenicke
   6. C Titus Brown
   7. Andrew Whitehead

   Reviewed by GigaScience

9. CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

   This article has 5 authors:

   1. Victor A Padilha
   2. Omer S Alkhnbashi
   3. Shiraz A Shah
   4. André C P L F de Carvalho
   5. Rolf Backofen

   Reviewed by GigaScience

10. An improved pig reference genome sequence to enable pig genetics and genomics research

    This article has 40 authors:

    1. Amanda Warr
    2. Nabeel Affara
    3. Bronwen Aken
    4. Hamid Beiki
    5. Derek M Bickhart
    6. Konstantinos Billis
    7. William Chow
    8. Lel Eory
    9. Heather A Finlayson
    10. Paul Flicek
    11. Carlos G Girón
    12. Darren K Griffin
    13. Richard Hall
    14. Greg Hannum
    15. Thibaut Hourlier
    16. Kerstin Howe
    17. David A Hume
    18. Osagie Izuogu
    19. Kristi Kim
    20. Sergey Koren
    21. Haibou Liu
    22. Nancy Manchanda
    23. Fergal J Martin
    24. Dan J Nonneman
    25. Rebecca E O'Connor
    26. Adam M Phillippy
    27. Gary A Rohrer
    28. Benjamin D Rosen
    29. Laurie A Rund
    30. Carole A Sargent
    31. Lawrence B Schook
    32. Steven G Schroeder
    33. Ariel S Schwartz
    34. Ben M Skinner
    35. Richard Talbot
    36. Elizabeth Tseng
    37. Christopher K Tuggle
    38. Mick Watson
    39. Timothy P L Smith
    40. Alan L Archibald

    Reviewed by GigaScience