GigaScience

Latest preprint reviews

1. Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis

   This article has 10 authors:

   1. Anton Zamyatin
   2. Pavel Avdeyev
   3. Jiangtao Liang
   4. Atashi Sharma
   5. Chujia Chen
   6. Varvara Lukyanchikova
   7. Nikita Alexeev
   8. Zhijian Tu
   9. Max A Alekseyev
   10. Igor V Sharakhov

   Reviewed by GigaScience

2. The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

   This article has 17 authors:

   1. Holly C Beale
   2. Jacquelyn M Roger
   3. Matthew A Cattle
   4. Liam T McKay
   5. Drew K A Thompson
   6. Katrina Learned
   7. A Geoffrey Lyle
   8. Ellen T Kephart
   9. Rob Currie
   10. Du Linh Lam
   11. Lauren Sanders
   12. Jacob Pfeil
   13. John Vivian
   14. Isabel Bjork
   15. Sofie R Salama
   16. David Haussler
   17. Olena M Vaske

   Reviewed by GigaScience

3. HTSlib: C library for reading/writing high-throughput sequencing data

   This article has 8 authors:

   1. James K Bonfield
   2. John Marshall
   3. Petr Danecek
   4. Heng Li
   5. Valeriu Ohan
   6. Andrew Whitwham
   7. Thomas Keane
   8. Robert M Davies

   Reviewed by GigaScience

4. MB-GAN: Microbiome Simulation via Generative Adversarial Network

   This article has 8 authors:

   1. Ruichen Rong
   2. Shuang Jiang
   3. Lin Xu
   4. Guanghua Xiao
   5. Yang Xie
   6. Dajiang J Liu
   7. Qiwei Li
   8. Xiaowei Zhan

   Reviewed by GigaScience

5. Lilikoi V2.0: a deep learning–enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data

   This article has 6 authors:

   1. Xinying Fang
   2. Yu Liu
   3. Zhijie Ren
   4. Yuheng Du
   5. Qianhui Huang
   6. Lana X Garmire

   Reviewed by GigaScience

6. Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses

   This article has 13 authors:

   1. Nikhil Bhagwat
   2. Amadou Barry
   3. Erin W Dickie
   4. Shawn T Brown
   5. Gabriel A Devenyi
   6. Koji Hatano
   7. Elizabeth DuPre
   8. Alain Dagher
   9. Mallar Chakravarty
   10. Celia M T Greenwood
   11. Bratislav Misic
   12. David N Kennedy
   13. Jean-Baptiste Poline

   Reviewed by GigaScience

7. Streamlining data-intensive biology with workflow systems

   This article has 8 authors:

   1. Taylor Reiter
   2. Phillip T Brooks†
   3. Luiz Irber†
   4. Shannon E K Joslin†
   5. Charles M Reid†
   6. Camille Scott†
   7. C Titus Brown
   8. N Tessa Pierce-Ward

   Reviewed by GigaScience

8. BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

   This article has 4 authors:

   1. Satria A Kautsar
   2. Justin J J van der Hooft
   3. Dick de Ridder
   4. Marnix H Medema

   Reviewed by GigaScience

9. Genome diversity in Ukraine

   This article has 30 authors:

   1. Taras K Oleksyk
   2. Walter W Wolfsberger
   3. Alexandra M Weber
   4. Khrystyna Shchubelka
   5. Olga T Oleksyk
   6. Olga Levchuk
   7. Alla Patrus
   8. Nelya Lazar
   9. Stephanie O Castro-Marquez
   10. Yaroslava Hasynets
   11. Patricia Boldyzhar
   12. Mikhailo Neymet
   13. Alina Urbanovych
   14. Viktoriya Stakhovska
   15. Kateryna Malyar
   16. Svitlana Chervyakova
   17. Olena Podoroha
   18. Natalia Kovalchuk
   19. Juan L Rodriguez-Flores
   20. Weichen Zhou
   21. Sarah Medley
   22. Fabia Battistuzzi
   23. Ryan Liu
   24. Yong Hou
   25. Siru Chen
   26. Huanming Yang
   27. Meredith Yeager
   28. Michael Dean
   29. Ryan E Mills
   30. Volodymyr Smolanka

   Reviewed by GigaScience

10. Tool recommender system in Galaxy using deep learning

    This article has 4 authors:

    1. Anup Kumar
    2. Helena Rasche
    3. Björn Grüning
    4. Rolf Backofen

    Reviewed by GigaScience