GigaScience

Latest preprint reviews

1. Long-reads assembly of the Brassica napus reference genome, Darmor-bzh

   This article has 20 authors:

   1. Mathieu Rousseau-Gueutin
   2. Caroline Belser
   3. Corinne Da Silva
   4. Gautier Richard
   5. Benjamin Istace
   6. Corinne Cruaud
   7. Cyril Falentin
   8. Franz Boideau
   9. Julien Boutte
   10. Regine Delourme
   11. Gwenaëlle Deniot
   12. Stefan Engelen
   13. Julie Ferreira de Carvalho
   14. Arnaud Lemainque
   15. Loeiz Maillet
   16. Jérôme Morice
   17. Patrick Wincker
   18. France Denoeud
   19. Anne-Marie Chèvre
   20. Jean-Marc Aury

   Reviewed by GigaScience

2. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacbio Sequel II system and ultralong reads of Oxford Nanopore

   This article has 15 authors:

   1. Dandan Lang
   2. Shilai Zhang
   3. Pingping Ren
   4. Fan Liang
   5. Zongyi Sun
   6. Guanliang Meng
   7. Yuntao Tan
   8. Jiang Hu
   9. Xiaokang Li
   10. Qihua Lai
   11. Lingling Han
   12. Depeng Wang
   13. Fengyi Hu
   14. Wen Wang
   15. Shanlin Liu

   Reviewed by GigaScience

3. DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data

   This article has 3 authors:

   1. Lukas M Simon
   2. Fangfang Yan
   3. Zhongming Zhao

   Reviewed by GigaScience

4. iGenomics: Comprehensive DNA Sequence Analysis on your Smartphone

   This article has 4 authors:

   1. Aspyn Palatnick
   2. Bin Zhou
   3. Elodie Ghedin
   4. Michael C. Schatz

   Reviewed by GigaScience

5. Accurate assembly of the olive baboon ( Papio anubis ) genome using long-read and Hi-C data

   This article has 11 authors:

   1. Sanjit Singh Batra
   2. Michal Levy-Sakin
   3. Jacqueline Robinson
   4. Joseph Guillory
   5. Steffen Durinck
   6. Tauras P Vilgalys
   7. Pui-Yan Kwok
   8. Laura A Cox
   9. Somasekar Seshagiri
   10. Yun S Song
   11. Jeffrey D Wall

   Reviewed by GigaScience

6. dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology

   This article has 3 authors:

   1. Christina Weiβbecker
   2. Beatrix Schnabel
   3. Anna Heintz-Buschart

   Reviewed by GigaScience

7. GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets

   This article has 9 authors:

   1. Miroslav Kratochvíl
   2. Oliver Hunewald
   3. Laurent Heirendt
   4. Vasco Verissimo
   5. Jiří Vondrášek
   6. Venkata P. Satagopam
   7. Reinhard Schneider
   8. Christophe Trefois
   9. Markus Ollert

   Reviewed by GigaScience

8. Correcting for experiment-specific variability in expression compendia can remove underlying signals

   This article has 5 authors:

   1. Alexandra J. Lee
   2. YoSon Park
   3. Georgia Doing
   4. Deborah A. Hogan
   5. Casey S. Greene

   Reviewed by GigaScience

9. A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework

   This article has 23 authors:

   1. Mehmet Tekman
   2. Bérénice Batut
   3. Alexander Ostrovsky
   4. Christophe Antoniewski
   5. Dave Clements
   6. Fidel Ramirez
   7. Graham J Etherington
   8. Hans-Rudolf Hotz
   9. Jelle Scholtalbers
   10. Jonathan R Manning
   11. Lea Bellenger
   12. Maria A Doyle
   13. Mohammad Heydarian
   14. Ni Huang
   15. Nicola Soranzo
   16. Pablo Moreno
   17. Stefan Mautner
   18. Irene Papatheodorou
   19. Anton Nekrutenko
   20. James Taylor
   21. Daniel Blankenberg
   22. Rolf Backofen
   23. Björn Grüning

   Reviewed by GigaScience

10. A map of tumor–host interactions in glioma at single-cell resolution

    This article has 16 authors:

    1. Francesca Pia Caruso
    2. Luciano Garofano
    3. Fulvio D'Angelo
    4. Kai Yu
    5. Fuchou Tang
    6. Jinzhou Yuan
    7. Jing Zhang
    8. Luigi Cerulo
    9. Stefano M Pagnotta
    10. Davide Bedognetti
    11. Peter A Sims
    12. Mario Suvà
    13. Xiao-Dong Su
    14. Anna Lasorella
    15. Antonio Iavarone
    16. Michele Ceccarelli

    Reviewed by GigaScience