GigaScience

Latest preprint reviews

1. The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

   This article has 17 authors:

   1. Holly C Beale
   2. Jacquelyn M Roger
   3. Matthew A Cattle
   4. Liam T McKay
   5. Drew K A Thompson
   6. Katrina Learned
   7. A Geoffrey Lyle
   8. Ellen T Kephart
   9. Rob Currie
   10. Du Linh Lam
   11. Lauren Sanders
   12. Jacob Pfeil
   13. John Vivian
   14. Isabel Bjork
   15. Sofie R Salama
   16. David Haussler
   17. Olena M Vaske

   Reviewed by GigaScience

2. HTSlib - C library for reading/writing high-throughput sequencing data

   This article has 8 authors:

   1. James K. Bonfield
   2. John Marshall
   3. Petr Danecek
   4. Heng Li
   5. Valeriu Ohan
   6. Andrew Whitwham
   7. Thomas Keane
   8. Robert M. Davies

   Reviewed by GigaScience

3. MB-GAN: Microbiome Simulation via Generative Adversarial Network

   This article has 8 authors:

   1. Ruichen Rong
   2. Shuang Jiang
   3. Lin Xu
   4. Guanghua Xiao
   5. Yang Xie
   6. Dajiang J Liu
   7. Qiwei Li
   8. Xiaowei Zhan

   Reviewed by GigaScience

4. Lilikoi V2.0: a deep-learning enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data

   This article has 6 authors:

   1. Xinying Fang
   2. Yu Liu
   3. Zhijie Ren
   4. Yuheng Du
   5. Qianhui Huang
   6. Lana X. Garmire

   Reviewed by GigaScience

5. Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses

   This article has 13 authors:

   1. Nikhil Bhagwat
   2. Amadou Barry
   3. Erin W. Dickie
   4. Shawn T. Brown
   5. Gabriel A. Devenyi
   6. Koji Hatano
   7. Elizabeth DuPre
   8. Alain Dagher
   9. M. Mallar Chakravarty
   10. Celia M. T. Greenwood
   11. Bratislav Misic
   12. David N. Kennedy
   13. Jean-Baptiste Poline

   Reviewed by GigaScience

6. Streamlining Data-Intensive Biology With Workflow Systems

   This article has 8 authors:

   1. Taylor Reiter
   2. Phillip T. Brooks
   3. Luiz Irber
   4. Shannon E.K. Joslin
   5. Charles M. Reid
   6. Camille Scott
   7. C. Titus Brown
   8. N. Tessa Pierce

   Reviewed by GigaScience

7. BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

   This article has 4 authors:

   1. Satria A Kautsar
   2. Justin J J van der Hooft
   3. Dick de Ridder
   4. Marnix H Medema

   Reviewed by GigaScience

8. Genome Diversity in Ukraine

   This article has 28 authors:

   1. Taras K. Oleksyk
   2. Walter W. Wolfsberger
   3. Alexandra Weber
   4. Khrystyna Shchubelka
   5. Olga T. Oleksyk
   6. Olga Levchuk
   7. Alla Patrus
   8. Nelya Lazar
   9. Stephanie O. Castro-Marquez
   10. Patricia Boldyzhar
   11. Alina Urbanovych
   12. Viktoriya Stakhovska
   13. Kateryna Malyar
   14. Svitlana Chervyakova
   15. Olena Podoroha
   16. Natalia Kovalchuk
   17. Yaroslava Hasynets
   18. Juan L. Rodriguez-Flores
   19. Sarah Medley
   20. Fabia Battistuzzi
   21. Ryan Liu
   22. Yong Hou
   23. Siru Chen
   24. Huanming Yang
   25. Meredith Yeager
   26. Michael Dean
   27. Ryan E. Mills
   28. Volodymyr Smolanka

   Reviewed by GigaScience

9. Tool recommender system in Galaxy using deep learning

   This article has 4 authors:

   1. Anup Kumar
   2. Helena Rasche
   3. Björn Grüning
   4. Rolf Backofen

   Reviewed by GigaScience

10. SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

    This article has 2 authors:

    1. Matthew D Young
    2. Sam Behjati

    Reviewed by GigaScience