GigaScience

Latest preprint reviews

1. demuxSNP: supervised demultiplexing scRNAseq using cell hashing and SNPs

   This article has 4 authors:

   1. Michael P. Lynch
   2. Yufei Wang
   3. Laurent Gatto
   4. Aedin C. Culhane

   Reviewed by GigaScience

2. stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multi-modal feature representation

   This article has 10 authors:

   1. Daoliang Zhang
   2. Na Yu
   3. Wenrui Li
   4. Xue Sun
   5. Qi Zou
   6. Xiangyu Li
   7. Zhiping Liu
   8. Zhiyuan Yuan
   9. Wei Zhang
   10. Rui Gao

   Reviewed by GigaScience

3. De novo assembly and characterization of a highly degenerated ZW sex chromosome in the fish Megaleporinus macrocephalus

   This article has 19 authors:

   1. Carolina Heloisa de Souza Borges
   2. Ricardo Utsunomia
   3. Alessandro Varani
   4. Marcela Uliano-Silva
   5. Lieschen Valeria G. Lira
   6. Arno J. Butzge
   7. John F. Gomez Agudelo
   8. Shisley Manso
   9. Milena V. Freitas
   10. Raquel B. Ariede
   11. Vito A. Mastrochirico-Filho
   12. Carolina Penaloza
   13. Agustín Barria
   14. Fábio Porto-Foresti
   15. Fausto Foresti
   16. Ricardo Hattori
   17. Yann Guiguen
   18. Ross D. Houston
   19. Diogo Teruo Hashimoto

   Reviewed by GigaScience

4. CAT Bridge: An Efficient Toolkit for Gene-Metabolite Association Mining from Multi-Omics Data

   This article has 11 authors:

   1. Bowen Yang
   2. Tan Meng
   3. Xinrui Wang
   4. Jun Li
   5. Shuang Zhao
   6. Yingheng Wang
   7. Shu Yi
   8. Yi Zhou
   9. Yi Zhang
   10. Liang Li
   11. Li Guo

   Reviewed by GigaScience

5. Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)

   This article has 5 authors:

   1. Seth A. Frazer
   2. Mahdi Baghbanzadeh
   3. Ali Rahnavard
   4. Keith A. Crandall
   5. Todd H. Oakley

   Reviewed by GigaScience

6. CoCoPyE: feature engineering for learning and prediction of genome quality indices

   This article has 7 authors:

   1. Niklas Birth
   2. Nicolina Leppich
   3. Julia Schirmacher
   4. Nina Andreae
   5. Rasmus Steinkamp
   6. Matthias Blanke
   7. Peter Meinicke

   Reviewed by GigaScience

7. A data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence (MISIP)

   This article has 7 authors:

   1. Abigayle Simpson
   2. Elisha M. Wood Charlson
   3. Montana Smith
   4. Kathleen Beilsmith
   5. Ben Koch
   6. Ramona L. Walls
   7. Roland C. Wilhelm

   Reviewed by GigaScience

8. StereoSiTE: A framework to spatially and quantitatively profile the cellular neighborhood organized iTME

   This article has 18 authors:

   1. Xing Liu
   2. Chi Qu
   3. Chuandong Liu
   4. Na Zhu
   5. Huaqiang Huang
   6. Fei Teng
   7. Caili Huang
   8. Bingying Luo
   9. Xuanzhu Liu
   10. Min Xie
   11. Feng Xi
   12. Mei Li
   13. Liang Wu
   14. Yuxiang Li
   15. Ao Chen
   16. Xun Xu
   17. Sha Liao
   18. Jiajun Zhang

   Reviewed by GigaScience

9. V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation

   This article has 19 authors:

   1. Lara Fuhrmann
   2. Kim Philipp Jablonski
   3. Ivan Topolsky
   4. Aashil A Batavia
   5. Nico Borgsmüller
   6. Pelin Icer Baykal
   7. Matteo Carrara
   8. Chaoran Chen
   9. Arthur Dondi
   10. Monica Dragan
   11. David Dreifuss
   12. Anika John
   13. Benjamin Langer
   14. Michal Okoniewski
   15. Louis du Plessis
   16. Uwe Schmitt
   17. Franziska Singer
   18. Tanja Stadler
   19. Niko Beerenwinkel

   Reviewed by GigaScience, GigaByte

10. TooManyCellsInteractive: a visualization tool for dynamic exploration of single-cell data

    This article has 3 authors:

    1. Conor Klamann
    2. Christie Lau
    3. Gregory W. Schwartz

    Reviewed by GigaScience