GigaScience

Latest preprint reviews

1. DENTIST – using long reads for closing assembly gaps at high accuracy

   This article has 4 authors:

   1. Arne Ludwig
   2. Martin Pippel
   3. Gene Myers
   4. Michael Hiller

   Reviewed by GigaScience

2. Sim3C: simulation of HiC and Meta3C proximity ligation sequencing technologies

   This article has 2 authors:

   1. Matthew Z DeMaere
   2. Aaron E Darling

   Reviewed by GigaScience

3. Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment

   This article has 5 authors:

   1. Yilei Fu
   2. Medhat Mahmoud
   3. Viginesh Vaibhav Muraliraman
   4. Fritz J Sedlazeck
   5. Todd J Treangen

   Reviewed by GigaScience

4. Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design

   This article has 8 authors:

   1. Lukas M. Weber
   2. Ariel A. Hippen
   3. Peter F. Hickey
   4. Kristofer C. Berrett
   5. Jason Gertz
   6. Jennifer Anne Doherty
   7. Casey S. Greene
   8. Stephanie C. Hicks

   Reviewed by GigaScience

5. Bias invariant RNA-seq metadata annotation

   This article has 4 authors:

   1. Hannes Wartmann
   2. Sven Heins
   3. Karin Kloiber
   4. Stefan Bonn

   Reviewed by GigaScience

6. Distinguish virulent and temperate phage-derived sequences in metavirome data with a deep learning approach

   This article has 9 authors:

   1. Shufang Wu
   2. Zhencheng Fang
   3. Jie Tan
   4. Mo Li
   5. Chunhui Wang
   6. Qian Guo
   7. Congmin Xu
   8. Xiaoqing Jiang
   9. Huaiqiu Zhu

   Reviewed by GigaScience

7. FASTQuick: Rapid and comprehensive quality assessment of raw sequence reads

   This article has 2 authors:

   1. Fan Zhang
   2. Hyun Min Kang

   Reviewed by GigaScience

8. CAMITAX: Taxon labels for microbial genomes

   This article has 3 authors:

   1. Andreas Bremges
   2. Adrian Fritz
   3. Alice C McHardy

   Reviewed by GigaScience

9. IKAP—Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis

   This article has 8 authors:

   1. Yun-Ching Chen
   2. Abhilash Suresh
   3. Chingiz Underbayev
   4. Clare Sun
   5. Komudi Singh
   6. Fayaz Seifuddin
   7. Adrian Wiestner
   8. Mehdi Pirooznia

   Reviewed by GigaScience

10. SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier

    This article has 2 authors:

    1. Xiao Hu
    2. Iddo Friedberg

    Reviewed by GigaScience