GigaScience

Latest preprint reviews

1. TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors

   This article has 15 authors:

   1. Markus Hoffmann
   2. Nico Trummer
   3. Leon Schwartz
   4. Jakub Jankowski
   5. Hye Kyung Lee
   6. Lina-Liv Willruth
   7. Olga Lazareva
   8. Kevin Yuan
   9. Nina Baumgarten
   10. Florian Schmidt
   11. Jan Baumbach
   12. Marcel H Schulz
   13. David B Blumenthal
   14. Lothar Hennighausen
   15. Markus List

   Reviewed by GigaScience

2. An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy

   This article has 4 authors:

   1. Anup Kumar
   2. Gianmauro Cuccuru
   3. Björn Grüning
   4. Rolf Backofen

   Reviewed by GigaScience

3. DivBrowse—interactive visualization and exploratory data analysis of variant call matrices

   This article has 6 authors:

   1. Patrick König
   2. Sebastian Beier
   3. Martin Mascher
   4. Nils Stein
   5. Matthias Lange
   6. Uwe Scholz

   Reviewed by GigaScience

4. The Regulatory Mendelian Mutation score for GRCh38

   This article has 3 authors:

   1. Lusiné Nazaretyan
   2. Martin Kircher
   3. Max Schubach

   Reviewed by GigaScience

5. The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics

   This article has 16 authors:

   1. Luc Cornet
   2. Benoit Durieu
   3. Frederik Baert
   4. Elizabet D'hooge
   5. David Colignon
   6. Loic Meunier
   7. Valérian Lupo
   8. Ilse Cleenwerck
   9. Heide-Marie Daniel
   10. Leen Rigouts
   11. Damien Sirjacobs
   12. Stéphane Declerck
   13. Peter Vandamme
   14. Annick Wilmotte
   15. Denis Baurain
   16. Pierre Becker

   Reviewed by GigaScience

6. Contamination detection and microbiome exploration with GRIMER

   This article has 2 authors:

   1. Vitor C Piro
   2. Bernhard Y Renard

   Reviewed by GigaScience

7. The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology

   This article has 16 authors:

   1. J. William O. Ballard
   2. Matt A. Field
   3. Richard J. Edwards
   4. Laura A.B. Wilson
   5. Loukas G. Koungoulos
   6. Benjamin D. Rosen
   7. Barry Chernoff
   8. Olga Dudchenko
   9. Arina Omer
   10. Jens Keilwagen
   11. Ksenia Skvortsova
   12. Ozren Bogdanovic
   13. Eva Chan
   14. Robert Zammit
   15. Vanessa Hayes
   16. Erez Lieberman Aiden

   Reviewed by GigaScience

8. Cell type–specific interpretation of noncoding variants using deep learning–based methods

   This article has 9 authors:

   1. Maria Sindeeva
   2. Nikolay Chekanov
   3. Manvel Avetisian
   4. Tatiana I Shashkova
   5. Nikita Baranov
   6. Elian Malkin
   7. Alexander Lapin
   8. Olga Kardymon
   9. Veniamin Fishman

   Reviewed by GigaScience

9. ViReMa : a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids

   This article has 7 authors:

   1. Stephanea Sotcheff
   2. Yiyang Zhou
   3. Jason Yeung
   4. Yan Sun
   5. John E Johnson
   6. Bruce E Torbett
   7. Andrew L Routh

   Reviewed by GigaScience

10. Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

    This article has 6 authors:

    1. Chen Yang
    2. Theodora Lo
    3. Ka Ming Nip
    4. Saber Hafezqorani
    5. René L Warren
    6. Inanc Birol

    Reviewed by GigaScience