GigaScience

Latest preprint reviews

1. Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing

   This article has 22 authors:

   1. Hollis A Dahn
   2. Jacquelyn Mountcastle
   3. Jennifer Balacco
   4. Sylke Winkler
   5. Iliana Bista
   6. Anthony D Schmitt
   7. Olga Vinnere Pettersson
   8. Giulio Formenti
   9. Karen Oliver
   10. Michelle Smith
   11. Wenhua Tan
   12. Anne Kraus
   13. Stephen Mac
   14. Lisa M Komoroske
   15. Tanya Lama
   16. Andrew J Crawford
   17. Robert W Murphy
   18. Samara Brown
   19. Alan F Scott
   20. Phillip A Morin
   21. Erich D Jarvis
   22. Olivier Fedrigo

   Reviewed by GigaScience

2. Stardust: improving spatial transcriptomics data analysis through space aware modularity optimization based clustering

   This article has 8 authors:

   1. Simone Avesani
   2. Eva Viesi
   3. Luca Alessandrì
   4. Giovanni Motterle
   5. Vincenzo Bonnici
   6. Marco Beccuti
   7. Raffaele Calogero
   8. Rosalba Giugno

   Reviewed by GigaScience

3. SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data

   This article has 5 authors:

   1. Yunwei Zhang
   2. Germaine Wong
   3. Graham Mann
   4. Samuel Muller
   5. Jean Y H Yang

   Reviewed by GigaScience

4. Meta-Prism 2.0: Enabling algorithm for ultra-fast, accurate and memory-efficient search among millions of microbial community samples

   This article has 3 authors:

   1. Kai Kang
   2. Hui Chong
   3. Kang Ning

   Reviewed by GigaScience

5. BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data

   This article has 6 authors:

   1. Carol Moraga
   2. Evelyn Sanchez
   3. Mariana Galvão Ferrarini
   4. Rodrigo A. Gutierrez
   5. Elena A. Vidal
   6. Marie-France Sagot

   Reviewed by GigaScience

6. Disease classification for whole blood DNA methylation: meta-analysis, missing values imputation, and XAI

   This article has 6 authors:

   1. Alena Kalyakulina
   2. Igor Yusipov
   3. Maria Giulia Bacalini
   4. Claudio Franceschi
   5. Maria Vedunova
   6. Mikhail Ivanchenko

   Reviewed by GigaScience

7. High-Spatiotemporal-Resolution Nanopore Sequencing of SARS-CoV-2 and Host Cell RNAs

   This article has 10 authors:

   1. Dóra Tombácz
   2. Ákos Dörmő
   3. Gábor Gulyás
   4. Zsolt Csabai
   5. István Prazsák
   6. Balázs Kakuk
   7. Ákos Harangozó
   8. István Jankovics
   9. Béla Dénes
   10. Zsolt Boldogkői

   Reviewed by GigaScience, ScreenIT

8. Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other non-standard architectures in genome assemblies

   This article has 4 authors:

   1. Miguel A. Naranjo-Ortiz
   2. Manu Molina
   3. Verónica Mixão
   4. Toni Gabaldón

   Reviewed by GigaScience

9. A curated human cellular microRNAome based on 196 primary cell types

   This article has 5 authors:

   1. Arun H. Patil
   2. Andrea Baran
   3. Zachary P. Brehm
   4. Matthew N. McCall
   5. Marc K. Halushka

   Reviewed by GigaScience

10. Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize

    This article has 12 authors:

    1. Ravi V. Mural
    2. Guangchao Sun
    3. Marcin Grzybowski
    4. Michael C. Tross
    5. Hongyu Jin
    6. Christine Smith
    7. Linsey Newton
    8. Carson M. Andorf
    9. Margaret R. Woodhouse
    10. Addie M. Thompson
    11. Brandi Sigmon
    12. James C. Schnable

    Reviewed by GigaScience