GigaScience

Latest preprint reviews

1. scShapes: a statistical framework for identifying distribution shapes in single-cell RNA-sequencing data

   This article has 4 authors:

   1. Malindrie Dharmaratne
   2. Ameya S Kulkarni
   3. Atefeh Taherian Fard
   4. Jessica C Mar

   Reviewed by GigaScience

2. xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments

   This article has 14 authors:

   1. Jesse Farek
   2. Daniel Hughes
   3. William Salerno
   4. Yiming Zhu
   5. Aishwarya Pisupati
   6. Adam Mansfield
   7. Olga Krasheninina
   8. Adam C English
   9. Ginger Metcalf
   10. Eric Boerwinkle
   11. Donna M Muzny
   12. Richard Gibbs
   13. Ziad Khan
   14. Fritz J Sedlazeck

   Reviewed by GigaScience

3. Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation

   This article has 15 authors:

   1. Harsh Shukla
   2. Kushal Suryamohan
   3. Anubhab Khan
   4. Krishna Mohan
   5. Rajadurai C Perumal
   6. Oommen K Mathew
   7. Ramesh Menon
   8. Mandumpala Davis Dixon
   9. Megha Muraleedharan
   10. Boney Kuriakose
   11. Saju Michael
   12. Sajesh P Krishnankutty
   13. Arun Zachariah
   14. Somasekar Seshagiri
   15. Uma Ramakrishnan

   Reviewed by GigaScience

4. Accurate and Fast Clade Assignment via Deep Learning and Frequency Chaos Game Representation

   This article has 5 authors:

   1. Jorge Avila Cartes
   2. Santosh Anand
   3. Simone Ciccolella
   4. Paola Bonizzoni
   5. Gianluca Della Vedova

   Reviewed by GigaScience

5. A Chromosome-level Assembly of the Japanese Eel Genome, Insights into Gene Duplication and Chromosomal Reorganization

   This article has 13 authors:

   1. Hongbo Wang
   2. Hin Ting Wan
   3. Bin Wu
   4. Jianbo Jian
   5. Alice HM Ng
   6. Claire Yik-Lok Chung
   7. Eugene Yui-Ching Chow
   8. Jizhou Zhang
   9. Anderson OL Wong
   10. Keng Po Lai
   11. Ting Fung Chan
   12. Eric Lu Zhang
   13. Chris Kong-Chu Wong

   Reviewed by GigaScience

6. DeePVP: Identification and classification of phage virion proteins using deep learning

   This article has 4 authors:

   1. Zhencheng Fang
   2. Tao Feng
   3. Hongwei Zhou
   4. Muxuan Chen

   Reviewed by GigaScience

7. Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing

   This article has 22 authors:

   1. Hollis A Dahn
   2. Jacquelyn Mountcastle
   3. Jennifer Balacco
   4. Sylke Winkler
   5. Iliana Bista
   6. Anthony D Schmitt
   7. Olga Vinnere Pettersson
   8. Giulio Formenti
   9. Karen Oliver
   10. Michelle Smith
   11. Wenhua Tan
   12. Anne Kraus
   13. Stephen Mac
   14. Lisa M Komoroske
   15. Tanya Lama
   16. Andrew J Crawford
   17. Robert W Murphy
   18. Samara Brown
   19. Alan F Scott
   20. Phillip A Morin
   21. Erich D Jarvis
   22. Olivier Fedrigo

   Reviewed by GigaScience

8. Stardust: improving spatial transcriptomics data analysis through space aware modularity optimization based clustering

   This article has 8 authors:

   1. Simone Avesani
   2. Eva Viesi
   3. Luca Alessandrì
   4. Giovanni Motterle
   5. Vincenzo Bonnici
   6. Marco Beccuti
   7. Raffaele Calogero
   8. Rosalba Giugno

   Reviewed by GigaScience

9. SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data

   This article has 5 authors:

   1. Yunwei Zhang
   2. Germaine Wong
   3. Graham Mann
   4. Samuel Muller
   5. Jean Y H Yang

   Reviewed by GigaScience

10. Meta-Prism 2.0: Enabling algorithm for ultra-fast, accurate and memory-efficient search among millions of microbial community samples

    This article has 3 authors:

    1. Kai Kang
    2. Hui Chong
    3. Kang Ning

    Reviewed by GigaScience