GigaScience

Latest preprint reviews

1. Loop detection using Hi-C data with HiCExplorer

   This article has 3 authors:

   1. Joachim Wolff
   2. Rolf Backofen
   3. Björn Grüning

   Reviewed by GigaScience

2. ChemChaste: Simulating spatially inhomogeneous biochemical reaction–diffusion systems for modeling cell–environment feedbacks

   This article has 3 authors:

   1. Connah G M Johnson
   2. Alexander G Fletcher
   3. Orkun S Soyer

   Reviewed by GigaScience

3. Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus

   This article has 14 authors:

   1. R. Alan Harris
   2. Muthuswamy Raveendran
   3. Dustin T. Lyfoung
   4. Fritz J Sedlazeck
   5. Medhat Mahmoud
   6. Trent M. Prall
   7. Julie A. Karl
   8. Harshavardhan Doddapaneni
   9. Qingchang Meng
   10. Yi Han
   11. Donna Muzny
   12. Roger W. Wiseman
   13. David H. O’Connor
   14. Jeffrey Rogers

   Reviewed by GigaScience, ScreenIT

4. A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae

   This article has 11 authors:

   1. Ziwei Wang
   2. Mathieu Rouard
   3. Manosh Kumar Biswas
   4. Gaetan Droc
   5. Dongli Cui
   6. Nicolas Roux
   7. Franc-Christophe Baurens
   8. Xue-Jun Ge
   9. Trude Schwarzacher
   10. Pat (J S) Heslop-Harrison
   11. Qing Liu

   Reviewed by GigaScience

5. Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification

   This article has 7 authors:

   1. Chakravarthi Kanduri
   2. Milena Pavlović
   3. Lonneke Scheffer
   4. Keshav Motwani
   5. Maria Chernigovskaya
   6. Victor Greiff
   7. Geir K Sandve

   Reviewed by GigaScience

6. Monash DaCRA fPET-fMRI: A dataset for comparison of radiotracer administration for high temporal resolution functional FDG-PET

   This article has 8 authors:

   1. Sharna D Jamadar
   2. Emma X Liang
   3. Shenjun Zhong
   4. Phillip G D Ward
   5. Alexandra Carey
   6. Richard McIntyre
   7. Zhaolin Chen
   8. Gary F Egan

   Reviewed by GigaScience

7. Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

   This article has 19 authors:

   1. Jean-Marc Aury
   2. Stefan Engelen
   3. Benjamin Istace
   4. Cécile Monat
   5. Pauline Lasserre-Zuber
   6. Caroline Belser
   7. Corinne Cruaud
   8. Hélène Rimbert
   9. Philippe Leroy
   10. Sandrine Arribat
   11. Isabelle Dufau
   12. Arnaud Bellec
   13. David Grimbichler
   14. Nathan Papon
   15. Etienne Paux
   16. Marion Ranoux
   17. Adriana Alberti
   18. Patrick Wincker
   19. Frédéric Choulet

   Reviewed by GigaScience

8. Message in a Bottle – Metabarcoding Enables Biodiversity Comparisons Across Ecoregions

   This article has 12 authors:

   1. D Steinke
   2. SL deWaard
   3. JE Sones
   4. NV Ivanova
   5. SWJ Prosser
   6. K Perez
   7. TWA Braukmann
   8. M Milton
   9. EV Zakharov
   10. JR deWaard
   11. S Ratnasingham
   12. PDN Hebert

   Reviewed by GigaScience

9. Tourmaline: a containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake

   This article has 7 authors:

   1. Luke R. Thompson
   2. Sean R. Anderson
   3. Paul A. Den Uyl
   4. Nastassia V. Patin
   5. Shen Jean Lim
   6. Grant Sanderson
   7. Kelly D. Goodwin

   Reviewed by GigaScience

10. Standardized genome-wide function prediction enables comparative functional genomics: a new application area for Gene Ontologies in plants

    This article has 10 authors:

    1. Leila Fattel
    2. Dennis Psaroudakis
    3. Colleen F Yanarella
    4. Kevin O Chiteri
    5. Haley A Dostalik
    6. Parnal Joshi
    7. Dollye C Starr
    8. Ha Vu
    9. Kokulapalan Wimalanathan
    10. Carolyn J Lawrence-Dill

    Reviewed by GigaScience