GigaScience

Latest preprint reviews

1. BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data

   This article has 6 authors:

   1. Carol Moraga
   2. Evelyn Sanchez
   3. Mariana Galvão Ferrarini
   4. Rodrigo A Gutierrez
   5. Elena A Vidal
   6. Marie-France Sagot

   Reviewed by GigaScience

2. Disease classification for whole blood DNA methylation: meta-analysis, missing values imputation, and XAI

   This article has 6 authors:

   1. Alena Kalyakulina
   2. Igor Yusipov
   3. Maria Giulia Bacalini
   4. Claudio Franceschi
   5. Maria Vedunova
   6. Mikhail Ivanchenko

   Reviewed by GigaScience

3. High-Spatiotemporal-Resolution Nanopore Sequencing of SARS-CoV-2 and Host Cell RNAs

   This article has 10 authors:

   1. Dóra Tombácz
   2. Ákos Dörmő
   3. Gábor Gulyás
   4. Zsolt Csabai
   5. István Prazsák
   6. Balázs Kakuk
   7. Ákos Harangozó
   8. István Jankovics
   9. Béla Dénes
   10. Zsolt Boldogkői

   Reviewed by GigaScience, ScreenIT

4. Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other non-standard architectures in genome assemblies

   This article has 4 authors:

   1. Miguel A. Naranjo-Ortiz
   2. Manu Molina
   3. Verónica Mixão
   4. Toni Gabaldón

   Reviewed by GigaScience

5. A curated human cellular microRNAome based on 196 primary cell types

   This article has 5 authors:

   1. Arun H. Patil
   2. Andrea Baran
   3. Zachary P. Brehm
   4. Matthew N. McCall
   5. Marc K. Halushka

   Reviewed by GigaScience

6. Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize

   This article has 12 authors:

   1. Ravi V. Mural
   2. Guangchao Sun
   3. Marcin Grzybowski
   4. Michael C. Tross
   5. Hongyu Jin
   6. Christine Smith
   7. Linsey Newton
   8. Carson M. Andorf
   9. Margaret R. Woodhouse
   10. Addie M. Thompson
   11. Brandi Sigmon
   12. James C. Schnable

   Reviewed by GigaScience

7. Spacemake: processing and analysis of large-scale spatial transcriptomics data

   This article has 4 authors:

   1. Tamas Ryszard Sztanka-Toth
   2. Marvin Jens
   3. Nikos Karaiskos
   4. Nikolaus Rajewsky

   Reviewed by GigaScience

8. Loop detection using Hi-C data with HiCExplorer

   This article has 3 authors:

   1. Joachim Wolff
   2. Rolf Backofen
   3. Björn Grüning

   Reviewed by GigaScience

9. ChemChaste: Simulating spatially inhomogeneous biochemical reaction–diffusion systems for modeling cell–environment feedbacks

   This article has 3 authors:

   1. Connah G M Johnson
   2. Alexander G Fletcher
   3. Orkun S Soyer

   Reviewed by GigaScience

10. Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus

    This article has 14 authors:

    1. R Alan Harris
    2. Muthuswamy Raveendran
    3. Dustin T Lyfoung
    4. Fritz J Sedlazeck
    5. Medhat Mahmoud
    6. Trent M Prall
    7. Julie A Karl
    8. Harshavardhan Doddapaneni
    9. Qingchang Meng
    10. Yi Han
    11. Donna Muzny
    12. Roger W Wiseman
    13. David H O'Connor
    14. Jeffrey Rogers

    Reviewed by GigaScience, ScreenIT