Arcadia Science

Latest preprint reviews

1. From Likelihood to Fitness: Improving Variant Effect Prediction in Protein and Genome Language Models

   This article has 4 authors:

   1. Charles W. J. Pugh
   2. Paulina G. Nuñez-Valencia
   3. Mafalda Dias
   4. Jonathan Frazer

   Reviewed by Arcadia Science

2. RamanMAE: Masked Autoencoders Enable Efficient Molecular Imaging by Learning Biologically Meaningful Spectral Representations

   This article has 2 authors:

   1. Santosh Kumar Paidi
   2. Parul Maheshwari

   Reviewed by Arcadia Science

3. Reconstitution of actomyosin networks in cell-sized liposomes reveals distinct mechanical roles of cytoskeletal organization in membrane shape remodeling

   This article has 3 authors:

   1. Makito Miyazaki
   2. Fahmida Sultana Laboni
   3. Taeyoon Kim

   Reviewed by Arcadia Science

4. The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes

   This article has 10 authors:

   1. Roni Odai
   2. Michèle Leemann
   3. Tamim Al-Murad
   4. Minhal Abdullah
   5. Lena Shyrokova
   6. Tanel Tenson
   7. Vasili Hauryliuk
   8. Janani Durairaj
   9. Joana Pereira
   10. Gemma C. Atkinson

   Reviewed by Arcadia Science

5. Bacterial Wastewater-Based Epidemiology Using Surface-Enhanced Raman Spectroscopy and Machine Learning

   This article has 7 authors:

   1. Liam K. Herndon
   2. Yirui Zhang
   3. Fareeha Safir
   4. Babatunde Ogunlade
   5. Halleh B. Balch
   6. Alexandria B. Boehm
   7. Jennifer A. Dionne

   Reviewed by Arcadia Science

6. Have protein-ligand co-folding methods moved beyond memorisation?

   This article has 4 authors:

   1. Peter Škrinjar
   2. Jérôme Eberhardt
   3. Janani Durairaj
   4. Torsten Schwede

   Reviewed by Arcadia Science

7. Venomous Maggots? A first exploration of the toxin arsenal of larval stages of the horse fly Tabanus autumnalis

   This article has 4 authors:

   1. Jonas Krämer
   2. Ludwig Dersch
   3. Andreas Vilcinskas
   4. Tim Lüddecke

   Reviewed by Arcadia Science

8. Metagenomes and Metagenome-Assembled Genomes from Tidal Lagoons at a New York City Waterfront Park

   This article has 21 authors:

   1. Sally Kong
   2. Eliana Abrams
   3. Yehuda Binik
   4. Christina Cappelli
   5. Mathew Chu
   6. Taiyo Cornett
   7. Isayah Culbertson
   8. Epifania Garcia
   9. Jada Henry
   10. Kristy Lam
   11. DB Lampman
   12. Grace Morenko
   13. Illusion Rivera
   14. Tanasia Swift
   15. Isabella Torres
   16. Rayven Velez
   17. Elliot Waxman
   18. Serena Wessely
   19. Anthony Yuen
   20. Casey K. Lardner
   21. JL Weissman

   Reviewed by Arcadia Science

9. AI.zymes – A modular platform for evolutionary enzyme design

   This article has 8 authors:

   1. Lucas Primus Merlicek
   2. Jannik Neumann
   3. Abbie Lear
   4. Vivian Degiorgi
   5. Moor de Waal
   6. Tudor-Stefan Cotet
   7. Adrian J. Mulholland
   8. Hans Adrian Bunzel

   Reviewed by Arcadia Science

10. In silico discovery of nanobody binders to a G-protein coupled receptor using AlphaFold-Multimer

    This article has 14 authors:

    1. Edward P. Harvey
    2. Jeffrey S. Smith
    3. Joseph D. Hurley
    4. Alyana Granados
    5. Ernst W. Schmid
    6. Jason G. Liang-Lin
    7. Steffanie Paul
    8. Emily M. Meara
    9. Matthew P. Ferguson
    10. Victor G. Calvillo-Miranda
    11. Debora S. Marks
    12. Johannes C. Walter
    13. Andrew C. Kruse
    14. Katherine J. Susa

    Reviewed by Arcadia Science