Systems Biology

  1. Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention

    1. Wyler Emanuel
    2. Mösbauer Kirstin
    3. Franke Vedran
    4. Diag Asija
    5. Gottula Lina Theresa
    6. Arsie Roberto
    7. Klironomos Filippos
    8. Koppstein David
    9. Ayoub Salah
    10. Buccitelli Christopher
    11. Richter Anja
    12. Legnini Ivano
    13. Ivanov Andranik
    14. Mari Tommaso
    15. Del Giudice Simone
    16. Papies Jan Patrick
    17. Müller Marcel Alexander
    18. Niemeyer Daniela
    19. Selbach Matthias
    20. Akalin Altuna
    21. Rajewsky Nikolaus
    22. Drosten Christian
    23. Landthaler Markus

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  2. An artificial intelligence system reveals liquiritin inhibits SARS-CoV-2 by mimicking type I interferon

    1. Jie Zhu
    2. Yong-Qiang Deng
    3. Xin Wang
    4. Xiao-Feng Li
    5. Na-Na Zhang
    6. Zurui Liu
    7. Bowen Zhang
    8. Cheng-Feng Qin
    9. Zhengwei Xie

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  3. Identification of potential treatments for COVID-19 through artificial intelligence-enabled phenomic analysis of human cells infected with SARS-CoV-2

    1. Katie Heiser
    2. Peter F. McLean
    3. Chadwick T. Davis
    4. Ben Fogelson
    5. Hannah B. Gordon
    6. Pamela Jacobson
    7. Brett Hurst
    8. Ben Miller
    9. Ronald W. Alfa
    10. Berton A. Earnshaw
    11. Mason L. Victors
    12. Yolanda T. Chong
    13. Imran S. Haque
    14. Adeline S. Low
    15. Christopher C. Gibson

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  4. Interplay of host regulatory network on SARS-CoV-2 binding and replication machinery

    1. Shiek SSJ Ahmed
    2. Prabu Paramasivam
    3. Kamal Raj
    4. Vishal Kumar
    5. Ram murugesan
    6. Ramakrishnan

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  5. Mechanistic modeling of the SARS-CoV-2 disease map

    1. Kinza Rian
    2. Marina Esteban-Medina
    3. Marta R. Hidalgo
    4. Cankut Çubuk
    5. Matias M. Falco
    6. Carlos Loucera
    7. Devrim Gunyel
    8. Marek Ostaszewski
    9. María Peña-Chilet
    10. Joaquín Dopazo

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  6. Integrative Network Biology Framework Elucidates Molecular Mechanisms of SARS-CoV-2 Pathogenesis

    1. Nilesh Kumar
    2. Bharat Mishra
    3. Adeel Mehmood
    4. Mohammad Athar
    5. M. Shahid Mukhtar

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  7. Functional Immune Deficiency Syndrome via Intestinal Infection in COVID-19

    1. Erica T. Prates
    2. Michael R. Garvin
    3. Mirko Pavicic
    4. Piet Jones
    5. Manesh Shah
    6. Christiane Alvarez
    7. David Kainer
    8. Omar Demerdash
    9. B Kirtley Amos
    10. Armin Geiger
    11. John Pestian
    12. Kang Jin
    13. Alexis Mitelpunkt
    14. Eric Bardes
    15. Bruce Aronow
    16. Daniel Jacobson

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  8. Iterative community-driven development of a SARS-CoV-2 tissue simulator

    1. Michael Getz
    2. Yafei Wang
    3. Gary An
    4. Maansi Asthana
    5. Andrew Becker
    6. Chase Cockrell
    7. Nicholson Collier
    8. Morgan Craig
    9. Courtney L. Davis
    10. James R. Faeder
    11. Ashlee N. Ford Versypt
    12. Tarunendu Mapder
    13. Juliano F. Gianlupi
    14. James A. Glazier
    15. Sara Hamis
    16. Randy Heiland
    17. Thomas Hillen
    18. Dennis Hou
    19. Mohammad Aminul Islam
    20. Adrianne L. Jenner
    21. Furkan Kurtoglu
    22. Caroline I. Larkin
    23. Bing Liu
    24. Fiona Macfarlane
    25. Pablo Maygrundter
    26. Penelope A Morel
    27. Aarthi Narayanan
    28. Jonathan Ozik
    29. Elsje Pienaar
    30. Padmini Rangamani
    31. Ali Sinan Saglam
    32. Jason Edward Shoemaker
    33. Amber M. Smith
    34. Jordan J.A. Weaver
    35. Paul Macklin

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  9. A data-driven drug repositioning framework discovered a potential therapeutic agent targeting COVID-19

    1. Yiyue Ge
    2. Tingzhong Tian
    3. Suling Huang
    4. Fangping Wan
    5. Jingxin Li
    6. Shuya Li
    7. Hui Yang
    8. Lixiang Hong
    9. Nian Wu
    10. Enming Yuan
    11. Lili Cheng
    12. Yipin Lei
    13. Hantao Shu
    14. Xiaolong Feng
    15. Ziyuan Jiang
    16. Ying Chi
    17. Xiling Guo
    18. Lunbiao Cui
    19. Liang Xiao
    20. Zeng Li
    21. Chunhao Yang
    22. Zehong Miao
    23. Haidong Tang
    24. Ligong Chen
    25. Hainian Zeng
    26. Dan Zhao
    27. Fengcai Zhu
    28. Xiaokun Shen
    29. Jianyang Zeng

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  10. Time-varying transmission dynamics of Novel Coronavirus Pneumonia in China

    1. Tao Liu
    2. Jianxiong Hu
    3. Jianpeng Xiao
    4. Guanhao He
    5. Min Kang
    6. Zuhua Rong
    7. Lifeng Lin
    8. Haojie Zhong
    9. Qiong Huang
    10. Aiping Deng
    11. Weilin Zeng
    12. Xiaohua Tan
    13. Siqing Zeng
    14. Zhihua Zhu
    15. Jiansen Li
    16. Dexin Gong
    17. Donghua Wan
    18. Shaowei Chen
    19. Lingchuan Guo
    20. Yan Li
    21. Limei Sun
    22. Wenjia Liang
    23. Tie Song
    24. Jianfeng He
    25. Wenjun Ma

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