Microbiology

Identifying Eukaryotes and Factors Influencing Their Biogeography in Drinking Water Metagenomes

1. Marco Gabrielli
2. Zihan Dai
3. Vincent Delafont
4. Peer H. A. Timmers
5. Paul W. J. J. van der Wielen
6. Manuela Antonelli
7. Ameet J. Pinto

Reviewed by Arcadia Science

Endozoicomonas -chlamydiae interactions in cell-associated microbial aggregates of the coral Pocillopora acuta

1. Justin Maire
2. Kshitij Tandon
3. Astrid Collingro
4. Allison van de Meene
5. Katarina Damjanovic
6. Cecilie Ravn Gøtze
7. Sophie Stephenson
8. Gayle K. Philip
9. Matthias Horn
10. Neal E. Cantin
11. Linda L. Blackall
12. Madeleine J. H. van Oppen

Reviewed by Arcadia Science

Assessing the biogeography of marine giant viruses in four oceanic transects

1. Anh D Ha
2. Mohammad Moniruzzaman
3. Frank O Aylward

Reviewed by Arcadia Science

Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities

1. Christina C. Saak
2. Emily C. Pierce
3. Cong B. Dinh
4. Daniel Portik
5. Richard Hall
6. Meredith Ashby
7. Rachel J. Dutton

Reviewed by Arcadia Science

Restriction Endonuclease-Based Modification-Dependent Enrichment (REMoDE) of DNA for Metagenomic Sequencing

1. Syed Usman Enam
2. Joshua L. Cherry
3. Susan R. Leonard
4. Ivan N. Zheludev
5. David J. Lipman
6. Andrew Z. Fire

Reviewed by Arcadia Science

Soil protists can actively redistribute beneficial bacteria along Medicago truncatula roots

1. Christopher J. Hawxhurst
2. Jamie L. Micciulla
3. Charles M. Bridges
4. Mikhael Shor
5. Daniel J. Gage
6. Leslie M. Shor

Reviewed by Arcadia Science

Guild and Niche Determination Enable Targeted Alteration of the Microbiome

1. Oriane Moyne
2. Mahmoud Al-Bassam
3. Chloe Lieng
4. Deepan Thiruppathy
5. Grant J. Norton
6. Manish Kumar
7. Eli Haddad
8. Livia S. Zaramela
9. Karsten Zengler

Reviewed by Arcadia Science

Bacterial cGAS-like enzymes produce 2′,3′-cGAMP to activate an ion channel that restricts phage replication

1. Uday Tak
2. Peace Walth
3. Aaron T. Whiteley

Reviewed by Arcadia Science

A pH-sensitive switch activates virulence in Salmonella

1. Dasvit Shetty
2. Linda J Kenney

• Curated by eLife

  eLife assessment

  Salmonella invades and survives in host cells via SPI-1 and SPI-2 type III secretion system mechanisms, with the SPI-2 system allowing for intracellular survival in Salmonella-containing vacuoles, which have a low-pH environment. Transcription of SPI-2 genes at low pH is activated by the DNA-binding SsrB protein, which sits at the top of the SPI-2 regulatory hierarchy. This study provides important insights as to how SsrB is allosterically affected by pH resulting in acid-dependent DNA binding. However, there are concerns about some experiments, and the evidence presented is not fully conclusive.

Reviewed by eLife

ORBIT for E. coli : Kilobase-scale oligonucleotide recombineering at high throughput and high efficiency

1. Scott H. Saunders
2. Ayesha M. Ahmed

Reviewed by Arcadia Science