1. Oxydifficidin, a potent Neisseria gonorrhoeae antibiotic due to DedA-assisted uptake and ribosomal protein RplL sensitivity

    This article has 8 authors:
    1. Jingbo Kan
    2. Adrian Morales-Amador
    3. Yozen Hernandez
    4. Melinda A Ternei
    5. Christophe Lemetre
    6. Logan W Maclntyre
    7. Nicolas Biais
    8. Sean F Brady
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      Kan et al. report the discovery of a Bacillus amyloliquifaciens strain that kills Nerisseria gonorrhoeae via oxydifficidin which targets ribosomal proteins. Resistance occurred via mutation in the DedA flippase to influence oxydifficidin uptake. The overall mechanism of action is well described making this an important study with implications for combating clinical antibiotic resistance. The evidence presented is convincing due to rigour employed in the methodological approach. The authors should consider performing a more comprehensive genetic analyses of DedA and RpIL in this clinically relevant strain. This work will be of broad interest to microbiologists and synthetic biologists.

    Reviewed by eLife

    This article has 10 evaluationsAppears in 1 listLatest version Latest activity
  2. The relationship between gut and nasopharyngeal microbiome composition can predict the severity of COVID-19

    This article has 26 authors:
    1. Benita Martin-Castaño
    2. Patricia Diez-Echave
    3. Jorge García-García
    4. Laura Hidalgo-García
    5. Antonio Jesús Ruiz-Malagon
    6. José Alberto Molina-Tijeras
    7. María Jesús Rodríguez-Sojo
    8. Anaïs Redruello-Romero
    9. Margarita Martínez-Zaldívar
    10. Emilio Mota
    11. Fernando Cobo
    12. Xando Díaz-Villamarin
    13. Marta Alvarez-Estevez
    14. Federico García
    15. Concepción Morales-García
    16. Silvia Merlos
    17. Paula Garcia-Flores
    18. Manuel Colmenero-Ruiz
    19. José Hernández-Quero
    20. Maria Nuñez
    21. Maria Elena Rodriguez-Cabezas
    22. Angel Carazo
    23. Javier Martin
    24. Rocio Moron
    25. Alba Rodríguez Nogales
    26. Julio Galvez
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This potentially valuable work characterizes the changes in the microbial composition of the nasal and fecal microbiomes in COVID-19 patients based on disease severity. This study enhances the understanding of COVID-19 severity predictors by identifying changes in bacterial species abundance in nasopharyngeal and fecal samples as a biomarker for predicting disease severity. The methods and statistics used appear to be solid and in line with the standards of the field.

    Reviewed by eLife

    This article has 9 evaluationsAppears in 1 listLatest version Latest activity
  3. Magnesium modulates phospholipid metabolism to promote bacterial phenotypic resistance to antibiotics

    This article has 6 authors:
    1. Hui Li
    2. Jun Yang
    3. Su-fang Kuang
    4. Huan-zhe Fu
    5. Hui-yin Lin
    6. Bo Peng
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      The study explored the influence of magnesium on phenotypic antibiotic resistance in two strains of Vibrios: V. alginolyticus ATCC33787 and V. parahaemolyticus VP01. This research is fundamental for revealing the phenotypic antibiotic resistance mechanism utilized by the specified model bacteria in elevated levels of magnesium. The study produced convincing evidence indicating that in high concentrations of magnesium, the efficacy of selected antibiotics was diminished due to decreased biosynthesis of unsaturated fatty acids and PE, along with an increase in the biosynthesis of PG.

    Reviewed by eLife

    This article has 8 evaluationsAppears in 1 listLatest version Latest activity
  4. Development of an Immunoassay for the Detection and Diagnosis of Microbially Influenced Corrosion Caused by Methanogenic Archaea

    This article has 2 authors:
    1. Sven Lahme
    2. Jorge Mantilla Aguas

    Reviewed by PREreview

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  5. Novel class IIb microcins show activity against Gram-negative ESKAPE and plant pathogens

    This article has 3 authors:
    1. Benedikt M Mortzfeld
    2. Shakti K Bhattarai
    3. Vanni Bucci
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This study presents important advances in the discovery and assessment of microcins that improve our understanding of their prevalence and roles. The bioinformatics analysis, expression, and antimicrobial assays are solid, although the diverging evaluations also indicated the need for additional support regarding the sequence analysis and validation to fully back some of the claims and conclusions. This study will appeal to researchers working on the discovery and analysis of novel peptide natural products.

    Reviewed by eLife

    This article has 10 evaluationsAppears in 1 listLatest version Latest activity
  6. A fast-acting inhibitor of blood-stage P. falciparum with mechanism distinct from artemisinin and chloroquine

    This article has 3 authors:
    1. Stephanie Kabeche
    2. Thomas Meister
    3. Ellen Yeh

    Reviewed by Rapid Reviews Infectious Diseases

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  7. A system for functional studies of the major virulence factor of malaria parasites

    This article has 18 authors:
    1. Jakob Cronshagen
    2. Johannes Allweier
    3. Paolo Mesén-Ramírez
    4. Jan Stäcker
    5. Anna Viktoria Vaaben
    6. Gala Ramón-Zamorano
    7. Isabel Naranjo-Prado
    8. Susann Ofori
    9. Pascal WTC Jansen
    10. Joëlle Hornebeck
    11. Florian Kieferle
    12. Agnes Murk
    13. Elicia Martin
    14. Carolina Castro-Peña
    15. Richárd Bártfai
    16. Thomas Lavstsen
    17. Iris Bruchhaus
    18. Tobias Spielmann
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This study introduces an important approach using selection linked integration (SLI) to generate Plasmodium falciparum lines expressing single, specific surface adhesins PfEMP1 variants, enabling precise study of PfEMP1 trafficking, receptor binding, and cytoadhesion. By moving the system to different parasite strains and introducing an advanced SLI2 system for additional genomic edits, this work provides compelling evidence for an innovative and rigorous platform to explore PfEMP1 biology and identify novel proteins essential for malaria pathogenesis including immune evasion.

    Reviewed by eLife

    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  8. Microbiota from young mice counteracts susceptibility to age-related gout through modulating butyric acid levels in aged mice

    This article has 8 authors:
    1. Ning Song
    2. Hang Gao
    3. Jianhao Li
    4. Yi Liu
    5. Mingze Wang
    6. Zhiming Ma
    7. Naisheng Zhang
    8. Wenlong Zhang
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This is an important study showing that age-related gut microbiota modulate uric acid metabolism through the NLRP3 inflammasome pathway and thereby regulate susceptibility to age-related gout. Several experimental approaches (mechanistic insights) and methods (data quality) remain incomplete. This paper should be of interest to researchers working on gout and microbiota.

    Reviewed by eLife

    This article has 12 evaluationsAppears in 1 listLatest version Latest activity
  9. Virus adaptation to heparan sulfate comes with capsid stability tradeoff

    This article has 9 authors:
    1. Han Kang Tee
    2. Simon Crouzet
    3. Arunima Muliyil
    4. Gregory Mathez
    5. Valeria Cagno
    6. Matteo Dal Peraro
    7. Aleksandar Antanasijevic
    8. Sophie Clément
    9. Caroline Tapparel
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This is an important work and it correlates capsid stability with mutations that promote heparan sulfate binding. The data is solid, but there is a need for further analysis and experiments to support the claims and to propose a more detailed mechanism that could explain how these mutations altered capsid stability.

    Reviewed by eLife

    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  10. Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

    This article has 13 authors:
    1. Iva Veseli
    2. Yiqun T Chen
    3. Matthew S Schechter
    4. Chiara Vanni
    5. Emily C Fogarty
    6. Andrea R Watson
    7. Bana Jabri
    8. Ran Blekhman
    9. Amy D Willis
    10. Michael K Yu
    11. Antonio Fernàndez-Guerra
    12. Jessika Füssel
    13. A Murat Eren
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This study presents an important new bioinformatics tool for normalizing gene copy number from metagenomic assemblies and applies it to gain functional insights into the loss of microbial diversity during conditions of stress. The inclusion of extensive computational validation makes this a compelling study that raises intriguing new hypotheses regarding the impact of disease states on the gut microbiome. This paper will likely be of broad interest to researchers studying the role of complex microbial communities in host health and disease.

    Reviewed by eLife

    This article has 9 evaluationsAppears in 1 listLatest version Latest activity
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