Bioinformatics

  1. Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

    1. Stephen J Bush
    2. Dona Foster
    3. David W Eyre
    4. Emily L Clark
    5. Nicola De Maio
    6. Liam P Shaw
    7. Nicole Stoesser
    8. Tim E A Peto
    9. Derrick W Crook
    10. A Sarah Walker

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. Assessment of human diploid genome assembly with 10x Linked-Reads data

    1. Lu Zhang
    2. Xin Zhou
    3. Ziming Weng
    4. Arend Sidow

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures

    1. Robail Yasrab
    2. Jonathan A Atkinson
    3. Darren M Wells
    4. Andrew P French
    5. Tony P Pridmore
    6. Michael P Pound

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. Evaluation of computational genotyping of structural variation for clinical diagnoses

    1. Varuna Chander
    2. Richard A Gibbs
    3. Fritz J Sedlazeck

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. ascend : R package for analysis of single-cell RNA-seq data

    1. Anne Senabouth
    2. Samuel W Lukowski
    3. Jose Alquicira Hernandez
    4. Stacey B Andersen
    5. Xin Mei
    6. Quan H Nguyen
    7. Joseph E Powell

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  6. Identifying, understanding, and correcting technical artifacts on the sex chromosomes in next-generation sequencing data

    1. Timothy H Webster
    2. Madeline Couse
    3. Bruno M Grande
    4. Eric Karlins
    5. Tanya N Phung
    6. Phillip A Richmond
    7. Whitney Whitford
    8. Melissa A Wilson

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language

    1. Michael Kotliar
    2. Andrey V Kartashov
    3. Artem Barski

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. A chromosome-scale assembly of the major African malaria vector Anopheles funestus

    1. Jay Ghurye
    2. Sergey Koren
    3. Scott T Small
    4. Seth Redmond
    5. Paul Howell
    6. Adam M Phillippy
    7. Nora J Besansky

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. GenPipes: an open-source framework for distributed and scalable genomic analyses

    1. Mathieu Bourgey
    2. Rola Dali
    3. Robert Eveleigh
    4. Kuang Chung Chen
    5. Louis Letourneau
    6. Joel Fillon
    7. Marc Michaud
    8. Maxime Caron
    9. Johanna Sandoval
    10. Francois Lefebvre
    11. Gary Leveque
    12. Eloi Mercier
    13. David Bujold
    14. Pascale Marquis
    15. Patrick Tran Van
    16. David Anderson de Lima Morais
    17. Julien Tremblay
    18. Xiaojian Shao
    19. Edouard Henrion
    20. Emmanuel Gonzalez
    21. Pierre-Olivier Quirion
    22. Bryan Caron
    23. Guillaume Bourque

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. Ultra-deep, long-read nanopore sequencing of mock microbial community standards

    1. Samuel M Nicholls
    2. Joshua C Quick
    3. Shuiquan Tang
    4. Nicholas J Loman

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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