Bioinformatics

  1. Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

    1. Dimitrios Voukantsis
    2. Kenneth Kahn
    3. Martin Hadley
    4. Rowan Wilson
    5. Francesca M. Buffa

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. PiGx: reproducible genomics analysis pipelines with GNU Guix

    1. Ricardo Wurmus
    2. Bora Uyar
    3. Brendan Osberg
    4. Vedran Franke
    5. Alexander Gosdschan
    6. Katarzyna Wreczycka
    7. Jonathan Ronen
    8. Altuna Akalin

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. Aequatus: an open-source homology browser

    1. Anil S Thanki
    2. Nicola Soranzo
    3. Javier Herrero
    4. Wilfried Haerty
    5. Robert P Davey

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. NAT/NCS2-hound: a webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family

    1. A Chaliotis
    2. P Vlastaridis
    3. C Ntountoumi
    4. M Botou
    5. V Yalelis
    6. P Lazou
    7. E Tatsaki
    8. D Mossialos
    9. S Frillingos
    10. G D Amoutzias

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. Prot-SpaM : fast alignment-free phylogeny reconstruction based on whole-proteome sequences

    1. Chris-Andre Leimeister
    2. Jendrik Schellhorn
    3. Svenja Dörrer
    4. Michael Gerth
    5. Christoph Bleidorn
    6. Burkhard Morgenstern

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. PhenoMeNal: processing and analysis of metabolomics data in the cloud

    1. Kristian Peters
    2. James Bradbury
    3. Sven Bergmann
    4. Marco Capuccini
    5. Marta Cascante
    6. Pedro de Atauri
    7. Timothy M D Ebbels
    8. Carles Foguet
    9. Robert Glen
    10. Alejandra Gonzalez-Beltran
    11. Ulrich L Günther
    12. Evangelos Handakas
    13. Thomas Hankemeier
    14. Kenneth Haug
    15. Stephanie Herman
    16. Petr Holub
    17. Massimiliano Izzo
    18. Daniel Jacob
    19. David Johnson
    20. Fabien Jourdan
    21. Namrata Kale
    22. Ibrahim Karaman
    23. Bita Khalili
    24. Payam Emami Khonsari
    25. Kim Kultima
    26. Samuel Lampa
    27. Anders Larsson
    28. Christian Ludwig
    29. Pablo Moreno
    30. Steffen Neumann
    31. Jon Ander Novella
    32. Claire O'Donovan
    33. Jake T M Pearce
    34. Alina Peluso
    35. Marco Enrico Piras
    36. Luca Pireddu
    37. Michelle A C Reed
    38. Philippe Rocca-Serra
    39. Pierrick Roger
    40. Antonio Rosato
    41. Rico Rueedi
    42. Christoph Ruttkies
    43. Noureddin Sadawi
    44. Reza M Salek
    45. Susanna-Assunta Sansone
    46. Vitaly Selivanov
    47. Ola Spjuth
    48. Daniel Schober
    49. Etienne A Thévenot
    50. Mattia Tomasoni
    51. Merlijn van Rijswijk
    52. Michael van Vliet
    53. Mark R Viant
    54. Ralf J M Weber
    55. Gianluigi Zanetti
    56. Christoph Steinbeck

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data

    1. Fadhl M Al-Akwaa
    2. Breck Yunits
    3. Sijia Huang
    4. Hassam Alhajaji
    5. Lana X Garmire

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. Efficient and accurate detection of splice junctions from RNAseq with Portcullis

    1. Daniel Mapleson
    2. Luca Venturini
    3. Gemy Kaithakottil
    4. David Swarbreck

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

    1. Lisa K Johnson
    2. Harriet Alexander
    3. C Titus Brown

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. Ximmer: a system for improving accuracy and consistency of CNV calling from exome data

    1. Simon P Sadedin
    2. Justine A Ellis
    3. Seth L Masters
    4. Alicia Oshlack

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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