Bioinformatics

  1. Rice Galaxy: an open resource for plant science

    1. Venice Juanillas
    2. Alexis Dereeper
    3. Nicolas Beaume
    4. Gaetan Droc
    5. Joshua Dizon
    6. John Robert Mendoza
    7. Jon Peter Perdon
    8. Locedie Mansueto
    9. Lindsay Triplett
    10. Jillian Lang
    11. Gabriel Zhou
    12. Kunalan Ratharanjan
    13. Beth Plale
    14. Jason Haga
    15. Jan E Leach
    16. Manuel Ruiz
    17. Michael Thomson
    18. Nickolai Alexandrov
    19. Pierre Larmande
    20. Tobias Kretzschmar
    21. Ramil P Mauleon

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls

    1. Brent S Pedersen
    2. Aaron R Quinlan

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  3. Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection

    1. Tazro Ohta
    2. Tomoya Tanjo
    3. Osamu Ogasawara

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. A multi-omics data simulator for complex disease studies and its application to evaluate multi-omics data analysis methods for disease classification

    1. Ren-Hua Chung
    2. Chen-Yu Kang

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

    1. Samuel Lampa
    2. Martin Dahlö
    3. Jonathan Alvarsson
    4. Ola Spjuth

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

    1. Dimitrios Voukantsis
    2. Kenneth Kahn
    3. Martin Hadley
    4. Rowan Wilson
    5. Francesca M. Buffa

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. PiGx: reproducible genomics analysis pipelines with GNU Guix

    1. Ricardo Wurmus
    2. Bora Uyar
    3. Brendan Osberg
    4. Vedran Franke
    5. Alexander Gosdschan
    6. Katarzyna Wreczycka
    7. Jonathan Ronen
    8. Altuna Akalin

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. Aequatus: an open-source homology browser

    1. Anil S Thanki
    2. Nicola Soranzo
    3. Javier Herrero
    4. Wilfried Haerty
    5. Robert P Davey

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. NAT/NCS2-hound: a webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family

    1. A Chaliotis
    2. P Vlastaridis
    3. C Ntountoumi
    4. M Botou
    5. V Yalelis
    6. P Lazou
    7. E Tatsaki
    8. D Mossialos
    9. S Frillingos
    10. G D Amoutzias

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. Prot-SpaM : fast alignment-free phylogeny reconstruction based on whole-proteome sequences

    1. Chris-Andre Leimeister
    2. Jendrik Schellhorn
    3. Svenja Dörrer
    4. Michael Gerth
    5. Christoph Bleidorn
    6. Burkhard Morgenstern

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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