Bioinformatics

  1. EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy

    1. Katarzyna Murat
    2. Björn Grüning
    3. Paulina Wiktoria Poterlowicz
    4. Gillian Westgate
    5. Desmond J Tobin
    6. Krzysztof Poterlowicz

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  2. Community standards for open cell migration data

    1. Alejandra N Gonzalez-Beltran
    2. Paola Masuzzo
    3. Christophe Ampe
    4. Gert-Jan Bakker
    5. Sébastien Besson
    6. Robert H Eibl
    7. Peter Friedl
    8. Matthias Gunzer
    9. Mark Kittisopikul
    10. Sylvia E Le Dévédec
    11. Simone Leo
    12. Josh Moore
    13. Yael Paran
    14. Jaime Prilusky
    15. Philippe Rocca-Serra
    16. Philippe Roudot
    17. Marc Schuster
    18. Gwendolien Sergeant
    19. Staffan Strömblad
    20. Jason R Swedlow
    21. Merijn van Erp
    22. Marleen Van Troys
    23. Assaf Zaritsky
    24. Susanna-Assunta Sansone
    25. Lennart Martens

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  3. Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples

    1. Rafael R C Cuadrat
    2. Maria Sorokina
    3. Bruno G Andrade
    4. Tobias Goris
    5. Alberto M R Dávila

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  4. Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

    1. Marco Antonio Tangaro
    2. Giacinto Donvito
    3. Marica Antonacci
    4. Matteo Chiara
    5. Pietro Mandreoli
    6. Graziano Pesole
    7. Federico Zambelli

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  5. ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

    1. Stephen R Piccolo
    2. Terry J Lee
    3. Erica Suh
    4. Kimball Hill

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Binning unassembled short reads based on k -mer abundance covariance using sparse coding

    1. Olexiy Kyrgyzov
    2. Vincent Prost
    3. Stéphane Gazut
    4. Bruno Farcy
    5. Thomas Brüls

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  7. Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

    1. Thomas McGowan
    2. James E Johnson
    3. Praveen Kumar
    4. Ray Sajulga
    5. Subina Mehta
    6. Pratik D Jagtap
    7. Timothy J Griffin

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  8. Interpretable and accurate prediction models for metagenomics data

    1. Edi Prifti
    2. Yann Chevaleyre
    3. Blaise Hanczar
    4. Eugeni Belda
    5. Antoine Danchin
    6. Karine Clément
    7. Jean-Daniel Zucker

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  9. HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

    1. Jerven Bolleman
    2. Edouard de Castro
    3. Delphine Baratin
    4. Sebastien Gehant
    5. Beatrice A Cuche
    6. Andrea H Auchincloss
    7. Elisabeth Coudert
    8. Chantal Hulo
    9. Patrick Masson
    10. Ivo Pedruzzi
    11. Catherine Rivoire
    12. Ioannis Xenarios
    13. Nicole Redaschi
    14. Alan Bridge

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity

  10. The Data Tags Suite (DATS) model for discovering data access and use requirements

    1. George Alter
    2. Alejandra Gonzalez-Beltran
    3. Lucila Ohno-Machado
    4. Philippe Rocca-Serra

    Reviewed by GigaScience

    1 evaluationAppears in 1 listLatest version Latest activity
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