Bioinformatics

A practical tool for maximal information coefficient analysis

1. Davide Albanese
2. Samantha Riccadonna
3. Claudio Donati
4. Pietro Franceschi

Reviewed by GigaScience

Accurate prediction of virus-host protein-protein interactions via a Siamese neural network using deep protein sequence embeddings

1. Sumit Madan
2. Victoria Demina
3. Marcus Stapf
4. Oliver Ernst
5. Holger Fröhlich

Reviewed by ScreenIT

SARS-CoV-2 helicase might interfere with cellular nonsense-mediated RNA decay: insights from a bioinformatics study

1. Behnia Akbari
2. Ehsan Ahmadi
3. Mohammad Reza Zabihi
4. Mina Roshan Zamir
5. Mina Sadeghi Shaker
6. Farshid Noorbakhsh

Reviewed by ScreenIT

Monitoring for SARS-CoV-2 drug resistance mutations in broad viral populations

1. Mayya Sedova
2. Lukasz Jaroszewski
3. Mallika Iyer
4. Adam Godzik

Reviewed by ScreenIT

Annotation of Hox cluster and Hox cofactor genes in the Asian citrus psyllid, Diaphorina citri, reveals novel features

1. Teresa D. Shippy
2. Prashant S. Hosmani
3. Mirella Flores-Gonzalez
4. Lukas A. Mueller
5. Wayne B. Hunter
6. Susan J. Brown
7. Tom D’Elia
8. Surya Saha

Reviewed by GigaByte

Annotation of putative circadian rhythm-associated genes in Diaphorina citri (Hemiptera: Liviidae)

1. Max Reynolds
2. Lucas de Oliveira
3. Chad Vosburg
4. Thomson Paris
5. Crissy Massimino
6. Jordan Norus
7. Yasmin Ortiz
8. Michelle Espino
9. Nina Davis
10. Ron Masse
11. Alan Neiman
12. Rachel Holcomb
13. Kylie Gervais
14. Melissa Kemp
15. Maria Hoang
16. Teresa D. Shippy
17. Prashant S. Hosmani
18. Mirella Flores-Gonzalez
19. Kirsten Pelz-Stelinski
20. Jawwad A. Qureshi
21. Lukas A. Mueller
22. Wayne B. Hunter
23. Joshua B. Benoit
24. Susan J. Brown
25. Tom D’Elia
26. Surya Saha

Reviewed by GigaByte

Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri

1. Teresa D. Shippy
2. Sherry Miller
3. Blessy Tamayo
4. Prashant S. Hosmani
5. Mirella Flores-Gonzalez
6. Lukas A. Mueller
7. Wayne B. Hunter
8. Susan J. Brown
9. Tom D’Elia
10. Surya Saha

Reviewed by GigaByte

Nomograms of human hippocampal volume shifted by polygenic scores

1. Mohammed Janahi
2. Leon Aksman
3. Jonathan M Schott
4. Younes Mokrab
5. Andre Altmann
6. On behalf of for the Alzheimer’s Disease Neuroimaging Initiative

• Curated by eLife

  Evaluation Summary:

  This manuscript considers whether genetic information can improve the clinical utility of population norms derived from brain imaging data. The authors propose to incorporate polygenic scores into normative models of hippocampal volume to improve predictions of neurodegenerative disease. This approach is elegantly demonstrated in this manuscript and may be useful for clinical translation of population neuroimaging.

  (This preprint has been reviewed by eLife. We include the public reviews from the reviewers here; the authors also receive private feedback with suggested changes to the manuscript. Reviewer #1 and Reviewer #2 agreed to share their name with the authors.)

Reviewed by eLife

Bayesian Inference of Dependent Population Dynamics in Coalescent Models

1. Lorenzo Cappello
2. Jaehee Kim
3. Julia Palacios

Reviewed by ScreenIT

Predictions of immunogenicity reveal potent SARS-CoV-2 CD8+ T-cell epitopes

1. David Gfeller
2. Julien Schmidt
3. Giancarlo Croce
4. Philippe Guillaume
5. Sara Bobisse
6. Raphael Genolet
7. Lise Queiroz
8. Julien Cesbron
9. Julien Racle
10. Alexandre Harari

Reviewed by ScreenIT