Bioinformatics

  3. Modeling causal signal propagation in multi-omic factor space with COSMOS

    1. Aurelien Dugourd
    2. Pascal Lafrenz
    3. Diego Mañanes
    4. Victor Paton
    5. Robin Fallegger
    6. Anne-Claire Kroger
    7. Denes Turei
    8. Yunfan Bai
    9. Yuxin Li
    10. Michael Trogdon
    11. Drew Nager
    12. Shibing Deng
    13. Chen Shen
    14. John D. Lapek
    15. Blerta Shtylla
    16. Julio Saez-Rodriguez

    Reviewed by Review Commons

    4 evaluationsAppears in 1 listLatest version Latest activity

  4. LadybirdBase: A comprehensive biology, ecology, and omics resource for ladybird beetles (Coccinellidae)

    1. Yi‐Fei Sun
    2. Kun‐Yu Yang
    3. Hao Li
    4. Yuan‐Sen Liang
    5. Li‐Qun Cai
    6. Jia‐Yi Xie
    7. You‐Wen Zhang
    8. Jia‐Yong Liang
    9. Qian Mou
    10. Ying‐Min Wang
    11. Dan Chen
    12. Meng‐Xue Qi
    13. Luis Carlos Ramos Aguila
    14. Muhammad Asghar Hassan
    15. Hao‐Sen Li
    16. Hong Pang

    Reviewed by PREreview

    1 evaluationAppears in 1 listLatest version Latest activity

  5. Extending Protein Language Models to a Viral Genomic Scale Using Biologically Induced Sparse Attention

    1. Thibaut Dejean
    2. Barbra D. Ferrell
    3. William Harrigan
    4. Zachary D. Schreiber
    5. Rajan Sawhney
    6. K. Eric Wommack
    7. Shawn W. Polson
    8. Mahdi Belcaid

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  6. KG-Microbe - Building Modular and Scalable Knowledge Graphs for Microbiome and Microbial Sciences

    1. Brook E. Santangelo
    2. Harshad Hegde
    3. J. Harry Caufield
    4. Justin Reese
    5. Tomas Kliegr
    6. Lawrence E. Hunter
    7. Catherine A. Lozupone
    8. Christopher J. Mungall
    9. Marcin P. Joachimiak

    Reviewed by GigaScience

    4 evaluationsAppears in 1 listLatest version Latest activity

  7. NanoporeDB: A Structural Resource Of Multimeric Protein Nanopores In Single-Molecule Sensing

    1. Yuqian Liu
    2. Zidong Su
    3. Wenzhen Yang
    4. Denghui Li
    5. Jiawen Zhang
    6. Yuning Zhang
    7. Tao Zeng
    8. Yong Zhang
    9. Yuxiang Li
    10. Guangyi Fan
    11. Kailong Ma
    12. Shanshan Liu
    13. Xun Xu
    14. Yuliang Dong
    15. Zongan Wang

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  8. ScopeViewer: A Browser-Based Solution for Visualizing Spatial Transcriptomics Data

    1. Danni Luo
    2. Sophie Robertson
    3. Yuanchun Zhan
    4. Ruichen Rong
    5. Shidan Wang
    6. Xi Jiang
    7. Sen Yang
    8. Suzette Palmer
    9. Liwei Jia
    10. Qiwei Li
    11. Guanghua Xiao
    12. Xiaowei Zhan

    Reviewed by GigaScience

    5 evaluationsAppears in 1 listLatest version Latest activity

  9. ChatMDV: Democratising Bioinformatics Analysis Using Large Language Models

    1. Maria Kiourlappou
    2. Peter Todd
    3. Yaxuan Kong
    4. Jayesh Hire
    5. Sibgathullah Furquan Nawab Mohammed
    6. Martin Sergeant
    7. Stefan Zohren
    8. Jim Hughes
    9. Stephen Taylor

    Reviewed by GigaScience

    2 evaluationsAppears in 1 listLatest version Latest activity

  10. CPSM: R-package of an Automated Machine Learning Pipeline for Predicting the Survival Probability of Single Cancer Patient

    1. Harpreet Kaur
    2. Pijush Das
    3. Kevin Camphausen
    4. Uma Shankavaram

    Reviewed by GigaScience

    3 evaluationsAppears in 1 listLatest version Latest activity
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