Evaluated articles

Pinpointing the microbiota of tardigrades: what is really there?

1. Bartłomiej Surmacz
2. Daniel Stec
3. Monika Prus-Frankowska
4. Mateusz Buczek
5. Łukasz Michalczyk
6. Piotr Łukasik

Reviewed by Arcadia Science

AutoPeptideML: A study on how to build more trustworthy peptide bioactivity predictors

1. Raul Fernandez-Diaz
2. Rodrigo Cossio-Pérez
3. Clement Agoni
4. Hoang Thanh Lam
5. Vanessa Lopez
6. Denis C. Shields

Reviewed by Arcadia Science

TRESK background potassium channel in MrgprA3 ⁺ pruriceptors regulates acute and chronic itch

1. Júlia Llimós-Aubach
2. Alba Andres-Bilbe
3. Anna Pujol-Coma
4. Irene Pallás
5. Josep Maria de Anta
6. Concepció Soler
7. Núria Comes
8. Gerard Callejo
9. Xavier Gasull

Reviewed by Arcadia Science

All three MutL complexes are required for repeat expansion in a human stem cell model of CAG-repeat expansion mediated glutaminase deficiency

1. Bruce Hayward
2. Daman Kumari
3. Saikat Santra
4. Clara D.M. van Karnebeek
5. André B.P. van Kuilenburg
6. Karen Usdin

Reviewed by Arcadia Science

Mantis: high-throughput 4D imaging and analysis of the molecular and physical architecture of cells

1. Ivan E. Ivanov
2. Eduardo Hirata-Miyasaki
3. Talon Chandler
4. Rasmi Cheloor-Kovilakam
5. Ziwen Liu
6. Soorya Pradeep
7. Chad Liu
8. Madhura Bhave
9. Sudip Khadka
10. Carolina Arias
11. Manuel D. Leonetti
12. Bo Huang
13. Shalin B. Mehta

Reviewed by Arcadia Science

Classification of bioactive peptides: a comparative analysis of models and encodings

1. Edoardo Bizzotto
2. Guido Zampieri
3. Laura Treu
4. Pasquale Filannino
5. Raffaella Di Cagno
6. Stefano Campanaro

Reviewed by Arcadia Science

Biophysical mechanism of ultrafast helical twisting contraction in the giant unicellular ciliate Spirostomum ambiguum

1. L. X. Xu
2. M. S. Bhamla

Reviewed by Arcadia Science

Multistability driven by cooperative growth in microbial communities

1. William Lopes
2. Daniel R. Amor
3. Jeff Gore

Reviewed by Arcadia Science

Disease-associated astrocyte epigenetic memory promotes CNS pathology

1. Hong-Gyun Lee
2. Joseph M. Rone
3. Zhaorong Li
4. Camilo Faust Akl
5. Seung Won Shin
6. Joon-Hyuk Lee
7. Lucas E. Flausino
8. Florian Pernin
9. Chun-Cheih Chao
10. Kilian L. Kleemann
11. Lena Srun
12. Tomer Illouz
13. Federico Giovannoni
14. Marc Charabati
15. Liliana M. Sanmarco
16. Jessica E. Kenison
17. Gavin Piester
18. Stephanie E. J. Zandee
19. Jack P. Antel
20. Veit Rothhammer
21. Michael A. Wheeler
22. Alexandre Prat
23. Iain C. Clark
24. Francisco J. Quintana

Reviewed by Arcadia Science

Sweet and fatty symbionts: photosynthetic productivity and carbon storage boosted in microalgae within a host

1. A. Catacora-Grundy
2. F. Chevalier
3. D. Yee
4. C. LeKieffre
5. N. L. Schieber
6. Y. Schwab
7. B. Gallet
8. P.H. Jouneau
9. G. Curien
10. J. Decelle

Reviewed by Arcadia Science

Comparative Hox genes expression within the dimorphic annelid Streblospio benedicti reveals patterning variation during development

1. Jose Maria Aguilar-Camacho
2. Nathan D. Harry
3. Christina Zakas

Reviewed by Arcadia Science

A benchmark for large language models in bioinformatics

1. Varuni Sarwal
2. Gaia Andreoletti
3. Viorel Munteanu
4. Ariel Suhodolschi
5. Dumitru Ciorba
6. Viorel Bostan
7. Mihai Dimian
8. Eleazar Eskin
9. Wei Wang
10. Serghei Mangul

Reviewed by Arcadia Science

Development of a sensor for disulfide bond formation in diverse bacteria

1. Jocelyne Mendoza
2. Dyotima
3. Sally Abulaila
4. Cristina Landeta

Reviewed by Arcadia Science

Single-cell eQTL mapping in yeast reveals a tradeoff between growth and reproduction

1. James Boocock
2. Noah Alexander
3. Leslie Alamo Tapia
4. Laura Walter-McNeill
5. Shivani Prashant Patel
6. Chetan Munugala
7. Joshua S Bloom
8. Leonid Kruglyak

• Curated by eLife

  eLife assessment

  This manuscript describes the mapping of natural DNA sequence variants that affect gene expression and its noise, as well as cell cycle timing, using as input single-cell RNA-sequencing of progeny from crosses between wild yeast strains. The method represents an important advance in the study of natural genetic variation. The findings, especially given the follow-up validation of the phenotypic impact of a mapped locus of major effect, provide convincing support for the rigor and utility of the method.

Reviewed by eLife, Arcadia Science

RamanSPy : An open-source Python package for integrative Raman spectroscopy data analysis

1. Dimitar Georgiev
2. Simon Vilms Pedersen
3. Ruoxiao Xie
4. Álvaro Fernández-Galiana
5. Molly M. Stevens
6. Mauricio Barahona

Reviewed by Arcadia Science

Technical upgrade of an open-source liquid handler to support bacterial colony screening

1. Irene del Olmo
2. Pablo Yubero
3. Álvaro Gómez-Luengo
4. Juan Nogales
5. David R. Espeso

Reviewed by Arcadia Science

Functional annotation hypothetical proteins: a world to be explored in drug development in Trypanosomatids

1. Raissa Santos de Lima
2. Ana Carolina Silva Bulla
3. Manuela Leal da Silva

Reviewed by Arcadia Science

Nanos2+ cells give rise to germline and somatic lineages in the sea anemone Nematostella vectensis

1. Andreas Denner
2. Julia Steger
3. Alexander Ries
4. Elizaveta Morozova-Link
5. Josefine Ritter
6. Franziska Haas
7. Alison G. Cole
8. Ulrich Technau

Reviewed by Arcadia Science

Beyond blast: enabling microbiologists to better extract literature, taxonomic distributions and gene neighbourhood information for protein families

1. Colbie J. Reed
2. Rémi Denise
3. Jacob Hourihan
4. Jill Babor
5. Marshall Jaroch
6. Maria Martinelli
7. Geoffrey Hutinet
8. Valérie de Crécy-Lagard

Reviewed by Arcadia Science

Novel Association of Lyme disease, Age, and Atopic Dermatitis

1. Brandon T. Lee
2. Sarah D. Galloway
3. Qingying Feng
4. Satu Strausz
5. Maia Shoham
6. Paige Hansen
7. Laughing Bear Torrez Dulgeroff
8. Grace Blacker
9. Ying Y. Yiu
10. Paul Mansfield
11. FinnGen
12. Atif Saleem
13. Eric Gars
14. Erin C. Sanders
15. Irving L. Weissman
16. Hanna M. Ollila
17. Michal Caspi Tal

Reviewed by Arcadia Science