Evaluated articles

ProtSpace: A Tool for Visualizing Protein Space

1. Tobias Senoner
2. Tobias Olenyi
3. Michael Heinzinger
4. Anton Spannagl
5. George Bouras
6. Burkhard Rost
7. Ivan Koludarov

Reviewed by Arcadia Science

Hepatic HKDC1 deletion alleviates western diet-induced MASH in mice

1. Kai Xu
2. Irene Corona-Avila
3. María Dolores Frutos
4. María Ángeles Núñez-Sánchez
5. Dhruvi Makhanasa
6. Pratham Viral Shah
7. Grace Guzman
8. Bruno Ramos-Molina
9. Medha Priyadarshini
10. Md. Wasim Khan

Reviewed by PREreview, Arcadia Science

The Effects of Nonlinear Signal on Expression-Based Prediction Performance

1. Benjamin J. Heil
2. Jake Crawford
3. Casey S. Greene

Reviewed by Arcadia Science, Review Commons

Cholinergic Waves Have a Modest Influence on the Transcriptome of Retinal Ganglion Cells

1. Rachana Deven Somaiya
2. Matthew A. Po
3. Marla B. Feller
4. Karthik Shekhar

Reviewed by Arcadia Science

Rapid Raman spectroscopy-based test for antimicrobial resistance

1. Vladimir Mushenkov
2. Ksenia Zhigalova
3. Pavel Denisov
4. Alexey Gordeev
5. Dmitry Lukyanov
6. Vladimir Kukushkin
7. Tatiana Priputnevich
8. Elena Zavyalova

Reviewed by Arcadia Science

Image-based profiling of healthy donor immune cells with Blood Cell Painting reveals novel genotype-phenotype associations

1. Caroline Högel-Starck
2. Veera A. Timonen
3. Gantugs Atarsaikhan
4. Isabel Mogollon
5. Minttu Polso
6. Antti Hassinen
7. Jarno Honkanen
8. Cindy David Sarmento
9. Jessica Koski
10. Julius Soini
11. Lea Urpa
12. Tanja Ruokoranta
13. Toveann Ahlnäs
14. Julianna Juvila
15. Juho J. Miettinen
16. Rodosthenis S. Rodosthenous
17. FinnGen
18. Outi Kilpivaara
19. Mikko Arvas
20. Caroline A. Heckman
21. Jukka Partanen
22. Mark Daly
23. Aarno Palotie
24. Hanna M. Ollila
25. Lassi Paavolainen
26. Vilja Pietiäinen
27. Esa Pitkänen

Reviewed by Arcadia Science

CaBLAM: a high-contrast bioluminescent Ca2+ indicator derived from an engineered Oplophorus gracilirostris luciferase

1. Gerard G. Lambert
2. Emmanuel L. Crespo
3. Jeremy Murphy
4. Kevin L. Turner
5. Emily Gershowitz
6. Michaela Cunningham
7. Daniela Boassa
8. Selena Luong
9. Dmitrijs Celinskis
10. Justine J. Allen
11. Stephanie Venn
12. Yunlu Zhu
13. Mürsel Karadas
14. Jiakun Chen
15. Roberta Marisca
16. Hannah Gelnaw
17. Daniel K. Nguyen
18. Junru Hu
19. Brittany N. Sprecher
20. Maya O. Tree
21. Richard Orcutt
22. Daniel Heydari
23. Aidan B. Bell
24. Albertina Torreblanca-Zanca
25. Ali Hakimi
26. Tim Czopka
27. Shy Shoham
28. Katherine I. Nagel
29. David Schoppik
30. Arturo Andrade
31. Diane Lipscombe
32. Christopher I. Moore
33. Ute Hochgeschwender
34. Nathan C. Shaner

Reviewed by Arcadia Science

A secreted helminth microRNA suppresses gastrointestinal cell differentiation required for innate immunity

1. Matias G. Perez
2. Victoria Gillan
3. William M. Anderson
4. François Gerbe
5. Fabien Herbert
6. Tom N. McNeilly
7. Rick M. Maizels
8. Philippe Jay
9. Eileen Devaney
10. Collette Britton

Reviewed by Arcadia Science

Virtual staining from bright-field microscopy for label-free quantitative analysis of plant cell structures

1. Manami Ichita
2. Haruna Yamamichi
3. Takumi Higaki

Reviewed by Arcadia Science

Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii

1. Ron Kelley
2. Sagar Khavnekar
3. Ricardo D. Righetto
4. Jessica Heebner
5. Martin Obr
6. Xianjun Zhang
7. Saikat Chakraborty
8. Grigory Tagiltsev
9. Alicia K. Michael
10. Sofie van Dorst
11. Florent Waltz
12. Caitlyn L. McCafferty
13. Lorenz Lamm
14. Simon Zufferey
15. Philippe Van der Stappen
16. Hugo van den Hoek
17. Wojciech Wietrzynski
18. Pavol Harar
19. William Wan
20. John A.G. Briggs
21. Jürgen M. Plitzko
22. Benjamin D. Engel
23. Abhay Kotecha

Reviewed by Arcadia Science

Mapping targetable sites on the human surfaceome for the design of novel binders

1. Petra E. M. Balbi
2. Ahmed Sadek
3. Anthony Marchand
4. Ta-Yi Yu
5. Jovan Damjanovic
6. Sandrine Georgeon
7. Joseph Schmidt
8. Simone Fulle
9. Che Yang
10. Hamed Khakzad
11. Bruno E. Correia

Reviewed by Arcadia Science

Viro3D: a comprehensive database of virus protein structure predictions

1. Ulad Litvin
2. Spyros Lytras
3. Alexander Jack
4. David L Robertson
5. Joseph Hughes
6. Joe Grove

Reviewed by Arcadia Science

Eliminating Aggressive Cancers via PROTAC-like Inducers of Ferroptosis

1. Avital Oknin-Vaisman
2. Deepanjan Panda
3. Rostislav Novak
4. Eliya Bitman-Lotan
5. Nikolett Pahor
6. Yamen Abu Ahmed
7. Guy Kamnesky
8. Markus E. Diefenbacher
9. Ashraf Brik
10. Amir Orian

Reviewed by Arcadia Science

Medium-sized protein language models perform well at transfer learning on realistic datasets

1. Luiz C. Vieira
2. Morgan L. Handojo
3. Claus O. Wilke

Reviewed by Arcadia Science

On the Variation of Structural Divergence Among Residues in Enzyme Evolution

1. Julian Echave
2. Mathilde Carpentier

Reviewed by Arcadia Science

Quantifying Data Distortion in Bar Graphs in Biological Research

1. Teng-Jui Lin
2. Markita P. Landry

Reviewed by Arcadia Science

Holotomographic microscopy reveals label-free quantitative dynamics of endothelial cells during endothelialization

1. William D. Leineweber
2. Gabriela Acevedo Munares
3. Christian Leycam
4. Raul Michael
5. Juliette Noyer
6. Patrick Jurney

Reviewed by Arcadia Science

Reviewed by Arcadia Science

Acetylation-Primed SUMOylation Drives RORβ Turnover via a p300-SIRT1 Regulatory Axis

1. Timothy R. O’Leary
2. Denis Shutin
3. Nadeska I. Montalvan
4. Nereida M. Abad-Yang
5. Vuong Dang
6. Dean P. Edwards
7. Patrick R. Griffin
8. Mi Ra Chang

Reviewed by Arcadia Science