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  1. Biological brain age prediction using machine learning on structural neuroimaging data: Multi-cohort validation against biomarkers of Alzheimer’s disease and neurodegeneration stratified by sex

    This article has 31 authors:
    1. Irene Cumplido-Mayoral
    2. Marina García-Prat
    3. Grégory Operto
    4. Carles Falcon
    5. Mahnaz Shekari
    6. Raffaele Cacciaglia
    7. Marta Milà-Alomà
    8. Luigi Lorenzini
    9. Silvia Ingala
    10. Alle Meije Wink
    11. Henk JMM Mutsaerts
    12. Carolina Minguillón
    13. Karine Fauria
    14. José Luis Molinuevo
    15. Sven Haller
    16. Gael Chetelat
    17. Adam Waldman
    18. Adam J Schwarz
    19. Frederik Barkhof
    20. Ivonne Suridjan
    21. Gwendlyn Kollmorgen
    22. Anna Bayfield
    23. Henrik Zetterberg
    24. Kaj Blennow
    25. Marc Suárez-Calvet
    26. Verónica Vilaplana
    27. Juan Domingo Gispert
    28. ALFA study
    29. EPAD study
    30. ADNI study
    31. OASIS study
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      The study has some significance for the field of dementia research and neurodegenerative diseases more broadly. Using the brain-age paradigm, the main findings are that having an older-appearing brain is associated with more advanced stages of amyloid and tau pathology, higher white matter hyperintensities, higher plasma NfL and carrying the APOE 34 allele. Findings were broadly similar in cognitively normal people and people with mild cognitive impairment and the evidence for these findings is convincing. Although sex differences are emphasized, the evidence for this is generally incomplete.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  2. Spatiotemporal tissue maturation of thalamocortical pathways in the human fetal brain

    This article has 18 authors:
    1. Siân Wilson
    2. Maximilian Pietsch
    3. Lucilio Cordero-Grande
    4. Daan Christiaens
    5. Alena Uus
    6. Vyacheslav R Karolis
    7. Vanessa Kyriakopoulou
    8. Kathleen Colford
    9. Anthony N Price
    10. Jana Hutter
    11. Mary A Rutherford
    12. Emer J Hughes
    13. Serena J Counsell
    14. Jacques-Donald Tournier
    15. Joseph V Hajnal
    16. A David Edwards
    17. Jonathan O’Muircheartaigh
    18. Tomoki Arichi
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This study presents important new findings regarding prenatal thalamocortical development. The authors present convincing evidence to overcome substantial methodological challenges in charting prenatal brain development in vivo. This work will be of interest to pediatric and developmental neuroscientists and neuroradiologists.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  3. Metabolic clogging of mannose triggers dNTP loss and genomic instability in human cancer cells

    This article has 19 authors:
    1. Yoichiro Harada
    2. Yu Mizote
    3. Takehiro Suzuki
    4. Akiyoshi Hirayama
    5. Satsuki Ikeda
    6. Mikako Nishida
    7. Toru Hiratsuka
    8. Ayaka Ueda
    9. Yusuke Imagawa
    10. Kento Maeda
    11. Yuki Ohkawa
    12. Junko Murai
    13. Hudson H Freeze
    14. Eiji Miyoshi
    15. Shigeki Higashiyama
    16. Heiichiro Udono
    17. Naoshi Dohmae
    18. Hideaki Tahara
    19. Naoyuki Taniguchi
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      The authors present valuable findings regarding the mechanism of high mannose induced cellular toxicity in cancer cells. The evidence supporting genomic instability as the anti-cancer activity of mannose is convincing with multiple orthogonal approaches showing consistent results, but the conclusions related to metabolic remodeling could be further strengthened by additional metabolomics data. While the findings are limited to genetically modified cancer cell lines cultured in vitro, this work will be of interest to cell biologists working on cancer metabolism.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  4. The effect of weight loss following 18 months of lifestyle intervention on brain age assessed with resting-state functional connectivity

    This article has 12 authors:
    1. Gidon Levakov
    2. Alon Kaplan
    3. Anat Yaskolka Meir
    4. Ehud Rinott
    5. Gal Tsaban
    6. Hila Zelicha
    7. Matthias Blüher
    8. Uta Ceglarek
    9. Michael Stumvoll
    10. Ilan Shelef
    11. Galia Avidan
    12. Iris Shai
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This potentially important study examines brain age based on resting state functional connectivity (RSFC) following an 18-month lifestyle intervention. The design of the intervention study is generally solid; the randomized controlled trial includes three intervention groups and assessments at two-time points of numerous health markers, however, the methodology for brain age prediction appears somewhat incomplete and would benefit from more rigorous approaches. The lack of control groups also prevents firm conclusions about the extent to which the observed RSFC changes are linked to the intervention. With these parts strengthened, the paper would be of broad interest to neuroscientists and biologists working on obesity, lifestyle interventions, and brain health.

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    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  5. Neuroelectrophysiology-compatible electrolytic lesioning

    This article has 5 authors:
    1. Iliana E Bray
    2. Stephen E Clarke
    3. Kerriann M Casey
    4. Paul Nuyujukian
    5. for the Brain Interfacing Laboratory
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This paper reports a valuable new method for creating localized damage to candidate brain regions for functional and behavioral studies. The authors present solid support for their ability to create long-term local lesions with mm spatial resolution. The paper is likely to be of broad interest to brain researchers working to establish causal links between neural circuits and behavior.

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    This article has 8 evaluationsAppears in 1 listLatest version Latest activity
  6. Endotaxis: A neuromorphic algorithm for mapping, goal-learning, navigation, and patrolling

    This article has 5 authors:
    1. Tony Zhang
    2. Matthew Rosenberg
    3. Zeyu Jing
    4. Pietro Perona
    5. Markus Meister
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This valuable work proposes a framework inspired by chemotaxis for understanding how the brain might implement behaviours related to navigating toward a goal. The evidence supporting the conceptual claim is convincing. The manuscript proposes a hypothesis that would be of interest to the broad systems neuroscience community, although it was noted the relationship to existing similar hypotheses could be clarified.

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    This article has 9 evaluationsAppears in 1 listLatest version Latest activity
  7. Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

    This article has 42 authors:
    1. M Elise Lauterbur
    2. Maria Izabel A Cavassim
    3. Ariella L Gladstein
    4. Graham Gower
    5. Nathaniel S Pope
    6. Georgia Tsambos
    7. Jeffrey Adrion
    8. Saurabh Belsare
    9. Arjun Biddanda
    10. Victoria Caudill
    11. Jean Cury
    12. Ignacio Echevarria
    13. Benjamin C Haller
    14. Ahmed R Hasan
    15. Xin Huang
    16. Leonardo Nicola Martin Iasi
    17. Ekaterina Noskova
    18. Jana Obsteter
    19. Vitor Antonio Correa Pavinato
    20. Alice Pearson
    21. David Peede
    22. Manolo F Perez
    23. Murillo F Rodrigues
    24. Chris CR Smith
    25. Jeffrey P Spence
    26. Anastasia Teterina
    27. Silas Tittes
    28. Per Unneberg
    29. Juan Manuel Vazquez
    30. Ryan K Waples
    31. Anthony Wilder Wohns
    32. Yan Wong
    33. Franz Baumdicker
    34. Reed A Cartwright
    35. Gregor Gorjanc
    36. Ryan N Gutenkunst
    37. Jerome Kelleher
    38. Andrew D Kern
    39. Aaron P Ragsdale
    40. Peter L Ralph
    41. Daniel R Schrider
    42. Ilan Gronau
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This important paper reports recent improvements and extensions to stdpopsim, a community-driven resource that is built on top of powerful software for performing simulations of population genomic data and provides a catalog of species with curated genomic parameters and demographic models. In addition to describing the new features and species in stdpopsim, the authors provide a set of practical guidelines for implementing realistic simulations. Overall, this convincing manuscript serves as an excellent overview of the utility, challenges, common pitfalls, and best practices of population genomic simulations. It will be of broad interest to population, evolutionary, and ecological geneticists studying humans, model organisms, or non-model organisms.

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    This article has 10 evaluationsAppears in 1 listLatest version Latest activity
  8. Structural foundation for the role of enterococcal PrgB in conjugation, biofilm formation, and virulence

    This article has 6 authors:
    1. Wei-Sheng Sun
    2. Lena Lassinantti
    3. Michael Järvå
    4. Andreas Schmitt
    5. Josy ter Beek
    6. Ronnie P-A Berntsson
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This study presents valuable structural data for the bacterial adhesin PrgB, an atypical microbial cell surface-anchored polypeptide that binds DNA. There is convincing support for the claims regarding the overall function and importance of individual domains, which integrate a wide range of new and previously published experimental data. The structure-based model of PrgB molecular activity will be impactful in the field of bacterial adhesins, conjugation, and biofilm formation, especially because it focuses on a clinically relevant Gram-positive pathogen, whereas most work in the field has been focused on Gram-negative model systems.

    Reviewed by eLife

    This article has 8 evaluationsAppears in 1 listLatest version Latest activity
  9. Inhibition of type I PRMTs reforms muscle stem cell identity enhancing their therapeutic capacity

    This article has 9 authors:
    1. Claudia Dominici
    2. Oscar D Villarreal
    3. Junio Dort
    4. Emilie Heckel
    5. Yu Chang Wang
    6. Ioannis Ragoussis
    7. Jean-Sebastien Joyal
    8. Nicolas Dumont
    9. Stéphane Richard
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This valuable paper informs on the role of type I PRMTs in programming muscle stem cell identification. The evidence presented is mostly solid, with some weaknesses in the evidence regarding the proposed mechanism. The paper will be of particular interest to those who study skeletal muscle satellite cell biology.

    Reviewed by eLife, Arcadia Science

    This article has 12 evaluationsAppears in 2 listsLatest version Latest activity
  10. Association between bisphosphonate use and COVID-19 related outcomes

    This article has 12 authors:
    1. Jeffrey Thompson
    2. Yidi Wang
    3. Tobias Dreischulte
    4. Olga Barreiro
    5. Rodrigo J Gonzalez
    6. Pavel Hanč
    7. Colette Matysiak
    8. Harold R Neely
    9. Marietta Rottenkolber
    10. Thomas Haskell
    11. Stefan Endres
    12. Ulrich H von Andrian
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      The authors have used an extensive database to study associations between biphosphanate use and COVID-19. Using careful statistical analyses biphosphonate use appeared strongly associated with a lower risk of COVID-19. If these findings are confirmed in well-designed prospective studies biphosphanate use could be an attractive drug to prevent COVID-19.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  11. Quantitative proteomic analysis of skeletal muscles from wild-type and transgenic mice carrying recessive Ryr1 mutations linked to congenital myopathies

    This article has 8 authors:
    1. Jan Eckhardt
    2. Alexis Ruiz
    3. Stéphane Koenig
    4. Maud Frieden
    5. Hervé Meier
    6. Alexander Schmidt
    7. Susan Treves
    8. Francesco Zorzato
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This paper provides a valuable systematic analysis of proteomic profiles associated with a particular murine Ryanodine receptor abnormality. Its analysis technique provides a solid and systematic set of data summarising the differences in different muscle types. The work emerges with insights into pathological mechanism of congenital muscle diseases linked to mutations in a range of other genes related to excitation contraction coupling in workers within the skeletal muscle field.

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    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  12. Evidence for embracing normative modeling

    This article has 7 authors:
    1. Saige Rutherford
    2. Pieter Barkema
    3. Ivy F Tso
    4. Chandra Sripada
    5. Christian F Beckmann
    6. Henricus G Ruhe
    7. Andre F Marquand
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This is a rigorous and compelling extension of previous normative modeling work that demonstrates that normative models incorporating lifespan trajectories of structural and functional connectivity provide a strong basis for brain imaging studies across a range of tasks including, univariate group difference assessment, classification, and building regression models. The work is important, rigorous and a valuable contribution to the field.

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    This article has 4 evaluationsAppears in 2 listsLatest version Latest activity
  13. An herbal drug combination identified by knowledge graph alleviates the clinical symptoms of plasma cell mastitis patients: A nonrandomized controlled trial

    This article has 11 authors:
    1. Caigang Liu
    2. Hong Yu
    3. Guanglei Chen
    4. Qichao Yang
    5. Zichu Wang
    6. Nan Niu
    7. Ling Han
    8. Dongyu Zhao
    9. Manji Wang
    10. Yuanyuan Liu
    11. Yongliang Yang
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This study presents a useful identification of an herbal drug combination for the treatment of plasma cell mastitis (PCM), a breast inflammation with severe and intense clinical symptoms. The data were collected and analyzed using a solid and in clinical trial of 160 patients (NCT05530226) and can be used as a starting point for understanding how herbal drug combinations could be helpful in the management of PCM patients.

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    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  14. Integrating contact tracing and whole-genome sequencing to track the elimination of dog-mediated rabies: An observational and genomic study

    This article has 32 authors:
    1. Kennedy Lushasi
    2. Kirstyn Brunker
    3. Malavika Rajeev
    4. Elaine A Ferguson
    5. Gurdeep Jaswant
    6. Laurie Louise Baker
    7. Roman Biek
    8. Joel Changalucha
    9. Sarah Cleaveland
    10. Anna Czupryna
    11. Anthony R Fooks
    12. Nicodemus J Govella
    13. Daniel T Haydon
    14. Paul CD Johnson
    15. Rudovick Kazwala
    16. Tiziana Lembo
    17. Denise Marston
    18. Msanif Masoud
    19. Matthew Maziku
    20. Eberhard Mbunda
    21. Geofrey Mchau
    22. Ally Z Mohamed
    23. Emmanuel Mpolya
    24. Chanasa Ngeleja
    25. Kija Ng'habi
    26. Hezron Nonga
    27. Kassim Omar
    28. Kristyna Rysava
    29. Maganga Sambo
    30. Lwitiko Sikana
    31. Rachel Steenson
    32. Katie Hampson
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This paper presents an analysis of both contact tracing and whole-genome sequence data to track the elimination of dog-mediated rabies in Pemba Island, Tanzania. The work is a valuable contribution to the literature as it will have practical implications for the elimination of dog-mediated rabies in other regions/contexts. The main claims made are largely supported, but the strength of evidence for the cost-effectiveness is limited.

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  15. ‘Skeletal Age’ for mapping the impact of fracture on mortality

    This article has 8 authors:
    1. Thach Tran
    2. Thao Ho-Le
    3. Dana Bliuc
    4. Bo Abrahamsen
    5. Louise Hansen
    6. Peter Vestergaard
    7. Jacqueline R Center
    8. Tuan V Nguyen
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This important study presents the idea of "Skeletal Age", defined as the age of one's skeleton as a consequence of fragility fracture, as a potential new tool to raise awareness about the increased risk of mortality following a fracture (particularly hip fractures) and thus improve the medical management of osteoporosis. The evidence is convincing and is derived from a very large database from the Danish National Hospital Discharge Registry. The proposed approach might represent a starting point for making doctor-patient communication about the health risks of an osteoporotic fracture more intuitive and possibly more effective.

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  16. Daily oscillation of the excitation/inhibition ratio is disrupted in two mouse models of autism

    This article has 15 authors:
    1. Michelle C.D. Bridi
    2. Nancy Luo
    3. Grace Kim
    4. Benjamin J. Menarchek
    5. Rachel A. Lee
    6. Bryan Rodriguez
    7. Daniel Severin
    8. Cristian Moreno
    9. Altagracia Contreras
    10. Christian Wesselborg
    11. Caroline O’Ferrall
    12. Ruchit Patel
    13. Sarah Bertrand
    14. Sujatha Kannan
    15. Alfredo Kirkwood
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This study presents an important finding on the cause of the widely reported disruption of the excitation to inhibition (E-I) ratio change in Autism Spectrum Disorder (ASD) mouse models. The evidence supporting the main conclusions is solid and well-sampled. These results can be a starting point for studies that assess the functional role of daily oscillations of the E-I ratio in the pathophysiology of ASD, and possibly, reshape our understanding of the nature of the E/I balance alterations that contribute to normal and diseased circuits.

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  17. Novel repertoire of tau biosensors to monitor pathological tau transformation and seeding activity in living cells

    This article has 10 authors:
    1. Erika Cecon
    2. Atsuro Oishi
    3. Marine Luka
    4. Delphine Ndiaye-Lobry
    5. Arnaud François
    6. Mathias Lescuyer
    7. Fany Panayi
    8. Julie Dam
    9. Patricia Machado
    10. Ralf Jockers
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      Understanding specific tau-tau interactions that play key roles in Alzheimer's disease and tauopathies will enable the elucidation of the toxic tau species involved in the pathogenesis of these diseases and therapeutic development in this area. In this paper, the authors developed a series of NanoBiT complementation-based tau biosensors to monitor tau intramolecular and intermolecular interactions. This paper will be of high interest to a broad target audience including researchers in the field of biophysics, biochemistry, cell biology, neuroscience, neuropathology, and drug discovery as well as physicians.

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  18. Increased cortical plasticity leads to memory interference and enhanced hippocampal-cortical interactions

    This article has 11 authors:
    1. Irene Navarro Lobato
    2. Adrian Aleman-Zapata
    3. Anumita Samanta
    4. Milan Bogers
    5. Shekhar Narayanan
    6. Abdelrahman Rayan
    7. Alejandra Alonso
    8. Jacqueline van der Meij
    9. Mehdi Khamassi
    10. Zafar U Khan
    11. Lisa Genzel
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      This important study reveals that slow plasticity in the neocortex is essential to prevent memory interference. The method of artificially increasing plasticity in the prefrontal cortex of rats during learning and its effect on sleep physiology, when memories are believed to be reprocessed, is solid. The work will be of interest to neuroscientists interested in learning and memory.

    Reviewed by eLife

    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  19. Distinct roles of forward and backward alpha-band waves in spatial visual attention

    This article has 4 authors:
    1. Andrea Alamia
    2. Lucie Terral
    3. Malo Renaud D'ambra
    4. Rufin VanRullen
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      Alamia and colleagues investigate the direction of traveling waves in the alpha frequency band during visual spatial attention. The authors' novel perspective adopted here is valuable to understanding the functional relevance of alpha oscillations for spatial attention. The observed pattern of results is consistent with distinct roles for travelling alpha waves in spatially opposite directions and makes a solid case for considering this new perspective on alpha rhythms in human cognitive function.

    Reviewed by eLife

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  20. Identification of a conserved S2 epitope present on spike proteins from all highly pathogenic coronaviruses

    This article has 26 authors:
    1. Rui P Silva
    2. Yimin Huang
    3. Annalee W Nguyen
    4. Ching-Lin Hsieh
    5. Oladimeji S Olaluwoye
    6. Tamer S Kaoud
    7. Rebecca E Wilen
    8. Ahlam N Qerqez
    9. Jun-Gyu Park
    10. Ahmed M Khalil
    11. Laura R Azouz
    12. Kevin C Le
    13. Amanda L Bohanon
    14. Andrea M DiVenere
    15. Yutong Liu
    16. Alison G Lee
    17. Dzifa A Amengor
    18. Sophie R Shoemaker
    19. Shawn M Costello
    20. Eduardo A Padlan
    21. Susan Marqusee
    22. Luis Martinez-Sobrido
    23. Kevin N Dalby
    24. Sheena D'Arcy
    25. Jason S McLellan
    26. Jennifer A Maynard
    This article has been curated by 1 group:
    • Curated by eLife

      eLife assessment

      Silva and colleagues present useful findings related to the isolation of an anti-S2 antibody that recognizes a previously uncharacterized SARS-CoV2 Spike (S) epitope, adding to the growing repertoire of anti-S antibodies that broadly cross-react against human and zoonotic coronaviruses. The evidence supporting the claims of the authors is solid, although antibody effectiveness as a prophylactic or therapeutic reagent in an animal model would have strengthened the study. The work will be of interest to biologists working to develop pan-coronavirus therapies.

    Reviewed by eLife, ScreenIT

    This article has 6 evaluationsAppears in 2 listsLatest version Latest activity