Evaluated articles

Showing page 18 of 19 pages of list content

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

This article has 3 authors:
1. Ruibang Luo
2. Michael C. Schatz
3. Steven L. Salzberg
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 15, 2017Latest activity Jan 13, 2022
Kronos: a workflow assembler for genome analytics and informatics

This article has 10 authors:
1. M. Jafar Taghiyar
2. Jamie Rosner
3. Diljot Grewal
4. Bruno M. Grande
5. Radhouane Aniba
6. Jasleen Grewal
7. Paul C. Boutros
8. Ryan D. Morin
9. Ali Bashashati
10. Sohrab P. Shah
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 26, 2017Latest activity Jan 13, 2022
Bio-Docklets: virtualization containers for single-step execution of NGS pipelines

This article has 5 authors:
1. Baekdoo Kim
2. Thahmina Ali
3. Carlos Lijeron
4. Enis Afgan
5. Konstantinos Krampis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 27, 2017Latest activity Jan 13, 2022
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

This article has 25 authors:
1. Boris Simovski
2. Daniel Vodák
3. Sveinung Gundersen
4. Diana Domanska
5. Abdulrahman Azab
6. Lars Holden
7. Marit Holden
8. Ivar Grytten
9. Knut Rand
10. Finn Drabløs
11. Morten Johansen
12. Antonio Mora
13. Christin Lund-Andersen
14. Bastian Fromm
15. Ragnhild Eskeland
16. Odd Stokke Gabrielsen
17. Egil Ferkingstad
18. Sigve Nakken
19. Mads Bengtsen
20. Alexander Johan Nederbragt
21. Hildur Sif Thorarensen
22. Johannes Andreas Akse
23. Ingrid Glad
24. Eivind Hovig
25. Geir Kjetil Sandve
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 27, 2017Latest activity Jan 13, 2022
Enhancing knowledge discovery from cancer genomics data with Galaxy

This article has 10 authors:
1. Marco A. Albuquerque
2. Bruno M. Grande
3. Elie J. Ritch
4. Prasath Pararajalingam
5. Selin Jessa
6. Martin Krzywinski
7. Jasleen K. Grewal
8. Sohrab P. Shah
9. Paul C. Boutros
10. Ryan D. Morin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 9, 2017Latest activity Jan 13, 2022
NanoSim: nanopore sequence read simulator based on statistical characterization

This article has 4 authors:
1. Chen Yang
2. Justin Chu
3. René L Warren
4. Inanç Birol
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 18, 2016Latest activity Jan 13, 2022
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

This article has 16 authors:
1. Benjamin Istace
2. Anne Friedrich
3. Léo d’Agata
4. Sébastien Faye
5. Emilie Payen
6. Odette Beluche
7. Claudia Caradec
8. Sabrina Davidas
9. Corinne Cruaud
10. Gianni Liti
11. Arnaud Lemainque
12. Stefan Engelen
13. Stefan Engelen
14. Patrick Wincker
15. Joseph Schacherer
16. Jean-Marc Aury
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 28, 2016Latest activity Jan 13, 2022
The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions

This article has 16 authors:
1. David O'Connor
2. Natan Vega Potler
3. Meagan Kovacs
4. Ting Xu
5. Lei Ai
6. John Pellman
7. Tamara Vanderwal
8. Lucas C. Parra
9. Samantha Cohen
10. Satrajit Ghosh
11. Jasmine Escalera
12. Natalie Grant-Villegas
13. Yael Osman
14. Anastasia Bui
15. R. Cameron Craddock
16. Michael P. Milham
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 7, 2017Latest activity Jan 4, 2022
The preprocessed connectomes project repository of manually corrected skull-stripped T1-weighted anatomical MRI data

This article has 5 authors:
1. Benjamin Puccio
2. James P Pooley
3. John S Pellman
4. Elise C Taverna
5. R Cameron Craddock
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Oct 25, 2016Latest activity Mar 14, 2022
Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets

This article has 7 authors:
1. Apurva Narechania
2. Richard Baker
3. Rob DeSalle
4. Barun Mathema
5. Sergios-Orestis Kolokotronis
6. Barry Kreiswirth
7. Paul J Planet
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 24, 2016Latest activity Jan 3, 2022
Circadian rhythms have significant effects on leaf-to-canopy scale gas exchange under field conditions

This article has 20 authors:
1. Víctor Resco de Dios
2. Arthur Gessler
3. Juan Pedro Ferrio
4. Josu G Alday
5. Michael Bahn
6. Jorge del Castillo
7. Sébastien Devidal
8. Sonia García-Muñoz
9. Zachary Kayler
10. Damien Landais
11. Paula Martín-Gómez
12. Alexandru Milcu
13. Clément Piel
14. Karin Pirhofer-Walzl
15. Olivier Ravel
16. Serajis Salekin
17. David T Tissue
18. Mark G Tjoelker
19. Jordi Voltas
20. Jacques Roy
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 20, 2016Latest activity Jan 3, 2022
Analyzing climate variations at multiple timescales can guide Zika virus response measures

This article has 4 authors:
1. ángel G Muñoz
2. Madeleine C Thomson
3. Lisa Goddard
4. Sylvain Aldighieri
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 6, 2016Latest activity Jan 3, 2022
Streaming algorithms for identification pathogens and antibiotic resistance potential from real-time MinION™ sequencing

This article has 6 authors:
1. Minh Duc Cao
2. Devika Ganesamoorthy
3. Alysha G Elliott
4. Huihui Zhang
5. Matthew A Cooper
6. Lachlan J M Coin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 26, 2016Latest activity Jan 3, 2022
Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature

This article has 11 authors:
1. Matthias Lange
2. Blaise T F Alako
3. Guy Cochrane
4. Mehmood Ghaffar
5. Martin Mascher
6. Pia-Katharina Habekost
7. Upneet Hillebrand
8. Uwe Scholz
9. Florian Schorch
10. Jens Freitag
11. Amber Hartman Scholz
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Dec 1, 2021Latest activity Jan 3, 2022
AGOUTI: improving genome assembly and annotation using transcriptome data

This article has 3 authors:
1. Simo V Zhang
2. Luting Zhuo
3. Matthew W Hahn
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 19, 2016Latest activity Jan 3, 2022
Tools and techniques for computational reproducibility

This article has 2 authors:
1. Stephen R. Piccolo
2. Michael B. Frampton
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 11, 2016Latest activity Jan 3, 2022
Myth-busting the provider-user relationship for digital sequence information

This article has 7 authors:
1. Amber Hartman Scholz
2. Matthias Lange
3. Pia Habekost
4. Paul Oldham
5. Ibon Cancio
6. Guy Cochrane
7. Jens Freitag
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Dec 1, 2021Latest activity Jan 3, 2022
Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

This article has 3 authors:
1. Alfonso Benítez-Páez
2. Kevin J Portune
3. Yolanda Sanz
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 28, 2016Latest activity Jan 3, 2022
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data

This article has 7 authors:
1. Judith Risse
2. Marian Thomson
3. Sheila Patrick
4. Garry Blakely
5. Georgios Koutsovoulos
6. Mark Blaxter
7. Mick Watson
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2015Latest activity Jan 3, 2022
NCBI BLAST+ integrated into Galaxy

This article has 5 authors:
1. Peter J. A. Cock
2. John M. Chilton
3. Björn Grüning
4. James E. Johnson
5. Nicola Soranzo
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Aug 25, 2015Latest activity Jan 3, 2022

Evaluated articles

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

Kronos: a workflow assembler for genome analytics and informatics

Bio-Docklets: virtualization containers for single-step execution of NGS pipelines

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

Enhancing knowledge discovery from cancer genomics data with Galaxy

NanoSim: nanopore sequence read simulator based on statistical characterization

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions

The preprocessed connectomes project repository of manually corrected skull-stripped T1-weighted anatomical MRI data

Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets

Circadian rhythms have significant effects on leaf-to-canopy scale gas exchange under field conditions

Analyzing climate variations at multiple timescales can guide Zika virus response measures

Streaming algorithms for identification pathogens and antibiotic resistance potential from real-time MinION™ sequencing

Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature

AGOUTI: improving genome assembly and annotation using transcriptome data

Tools and techniques for computational reproducibility

Myth-busting the provider-user relationship for digital sequence information

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data

NCBI BLAST+ integrated into Galaxy