Evaluated articles

Showing page 18 of 22 pages of list content

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

This article has 3 authors:
1. Lisa K Johnson
2. Harriet Alexander
3. C Titus Brown
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 13, 2018Latest activity Jan 22, 2022
Ximmer: a system for improving accuracy and consistency of CNV calling from exome data

This article has 4 authors:
1. Simon P Sadedin
2. Justine A Ellis
3. Seth L Masters
4. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 6, 2018Latest activity Jan 22, 2022
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

This article has 20 authors:
1. Zhouchun Shang
2. Dongsheng Chen
3. Quanlei Wang
4. Shengpeng Wang
5. Qiuting Deng
6. Liang Wu
7. Chuanyu Liu
8. Xiangning Ding
9. Shiyou Wang
10. Jixing Zhong
11. Doudou Zhang
12. Xiaodong Cai
13. Shida Zhu
14. Huanming Yang
15. Longqi Liu
16. J Lynn Fink
17. Fang Chen
18. Xiaoqing Liu
19. Zhengliang Gao
20. Xun Xu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 18, 2018Latest activity Jan 22, 2022
Monitoring changes in the Gene Ontology and their impact on genomic data analysis

This article has 3 authors:
1. Matthew Jacobson
2. Adriana Estela Sedeño-Cortés
3. Paul Pavlidis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2018Latest activity Jan 22, 2022
Imaging tissues and cells beyond the diffraction limit with structured illumination microscopy and Bayesian image reconstruction

This article has 6 authors:
1. Jakub Pospíšil
2. Tomáš Lukeš
3. Justin Bendesky
4. Karel Fliegel
5. Kathrin Spendier
6. Guy M. Hagen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 25, 2018Latest activity Jan 22, 2022
PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics

This article has 8 authors:
1. Jie Zheng
2. Tom G. Richardson
3. Louise A. C. Millard
4. Gibran Hemani
5. Christopher Raistrick
6. Bjarni Vilhjalmsson
7. Philip Haycock
8. Tom R Gaunt
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 10, 2017Latest activity Jan 22, 2022
ANNOgesic: A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes

This article has 3 authors:
1. Sung-Huan Yu
2. Jörg Vogel
3. Konrad U. Förstner
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 27, 2017Latest activity Jan 22, 2022
Clinker: visualizing fusion genes detected in RNA-seq data

This article has 7 authors:
1. Breon M Schmidt
2. Nadia M Davidson
3. Anthony D K Hawkins
4. Ray Bartolo
5. Ian J Majewski
6. Paul G Ekert
7. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution

This article has 7 authors:
1. Li Charlie Xia
2. Dongmei Ai
3. Hojoon Lee
4. Noemi Andor
5. Chao Li
6. Nancy R Zhang
7. Hanlee P Ji
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Clustering trees: a visualization for evaluating clusterings at multiple resolutions

This article has 2 authors:
1. Luke Zappia
2. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye

This article has 11 authors:
1. Jang-il Sohn
2. Kyoungwoo Nam
3. Hyosun Hong
4. Jun-Mo Kim
5. Dajeong Lim
6. Kyung-Tai Lee
7. Yoon Jung Do
8. Chang Yeon Cho
9. Namshin Kim
10. Han-Ha Chai
11. Jin-Wu Nam
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Leveraging multiple transcriptome assembly methods for improved gene structure annotation

This article has 5 authors:
1. Luca Venturini
2. Shabhonam Caim
3. Gemy George Kaithakottil
4. Daniel Lee Mapleson
5. David Swarbreck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 24, 2018Latest activity Jan 22, 2022
Hot-starting software containers for STAR aligner

This article has 4 authors:
1. Pai Zhang
2. Ling-Hong Hung
3. Wes Lloyd
4. Ka Yee Yeung
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 31, 2018Latest activity Jan 22, 2022
AMBER: Assessment of Metagenome BinnERs

This article has 7 authors:
1. Fernando Meyer
2. Peter Hofmann
3. Peter Belmann
4. Ruben Garrido-Oter
5. Adrian Fritz
6. Alexander Sczyrba
7. Alice C McHardy
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2018Latest activity Jan 22, 2022
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data

This article has 9 authors:
1. L M Simon
2. S Karg
3. A J Westermann
4. M Engel
5. A H A Elbehery
6. B Hense
7. M Heinig
8. L Deng
9. F J Theis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2018Latest activity Jan 22, 2022
YAMP: a containerized workflow enabling reproducibility in metagenomics research

This article has 3 authors:
1. Alessia Visconti
2. Tiphaine C Martin
3. Mario Falchi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 18, 2018Latest activity Jan 22, 2022
Arabidopsis phenotyping through Geometric Morphometrics

This article has 2 authors:
1. Carlos A. Manacorda
2. Sebastian Asurmendi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 27, 2017Latest activity Jan 22, 2022
Experimenting with reproducibility in bioinformatics

This article has 3 authors:
1. Yang-Min Kim
2. Jean-Baptiste Poline
3. Guillaume Dumas
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 20, 2017Latest activity Jan 22, 2022
Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

This article has 2 authors:
1. Nadia M Davidson
2. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 9, 2017Latest activity Jan 22, 2022
Fast-SG: an alignment-free algorithm for hybrid assembly

This article has 4 authors:
1. Alex Di Genova
2. Gonzalo A Ruz
3. Marie-France Sagot
4. Alejandro Maass
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022