Evaluated articles

Showing page 17 of 19 pages of list content

Draft genome of the reindeer ( Rangifer tarandus )

This article has 9 authors:
1. Zhipeng Li
2. Zeshan Lin
3. Hengxing Ba
4. Lei Chen
5. Yongzhi Yang
6. Kun Wang
7. Qiang Qiu
8. Wen Wang
9. Guangyu Li
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2017Latest activity Jan 14, 2022
Conventional and hyperspectral time-series imaging of maize lines widely used in field trials

This article has 7 authors:
1. Zhikai Liang
2. Piyush Pandey
3. Vincent Stoerger
4. Yuhang Xu
5. Yumou Qiu
6. Yufeng Ge
7. James C Schnable
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Nov 24, 2017Latest activity Feb 20, 2022
Construction of the third-generation Zea mays haplotype map

This article has 26 authors:
1. Robert Bukowski
2. Xiaosen Guo
3. Yanli Lu
4. Cheng Zou
5. Bing He
6. Zhengqin Rong
7. Bo Wang
8. Dawen Xu
9. Bicheng Yang
10. Chuanxiao Xie
11. Longjiang Fan
12. Shibin Gao
13. Xun Xu
14. Gengyun Zhang
15. Yingrui Li
16. Yinping Jiao
17. John F Doebley
18. Jeffrey Ross-Ibarra
19. Anne Lorant
20. Vince Buffalo
21. M Cinta Romay
22. Edward S Buckler
23. Doreen Ware
24. Jinsheng Lai
25. Qi Sun
26. Yunbi Xu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 30, 2017Latest activity Jan 13, 2022
MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle

This article has 6 authors:
1. Valerie De Anda
2. Icoquih Zapata-Peñasco
3. Augusto Cesar Poot-Hernandez
4. Luis E Eguiarte
5. Bruno Contreras-Moreira
6. Valeria Souza
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 23, 2017Latest activity Jan 13, 2022
The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

This article has 6 authors:
1. Aleksey V Zimin
2. Daniela Puiu
3. Richard Hall
4. Sarah Kingan
5. Bernardo J Clavijo
6. Steven L Salzberg
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 23, 2017Latest activity Jan 13, 2022
Indexcov: fast coverage quality control for whole-genome sequencing

This article has 4 authors:
1. Brent S Pedersen
2. Ryan L Collins
3. Michael E Talkowski
4. Aaron R Quinlan
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 18, 2017Latest activity Jan 13, 2022
High precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization

This article has 5 authors:
1. Gregory D. Marquart
2. Kathryn M. Tabor
3. Eric J. Horstick
4. Mary Brown
5. Harold A. Burgess
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 14, 2016Latest activity Jan 13, 2022
fastBMA: Scalable Network Inference and Transitive Reduction

This article has 6 authors:
1. Ling-Hong Hung
2. Kaiyuan Shi
3. Migao Wu
4. William Chad Young
5. Adrian E. Raftery
6. Ka Yee Yeung
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 6, 2017Latest activity Jan 13, 2022
Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping

This article has 12 authors:
1. Michael P. Pound
2. Alexandra J. Burgess
3. Michael H. Wilson
4. Jonathan A. Atkinson
5. Marcus Griffiths
6. Aaron S. Jackson
7. Adrian Bulat
8. yorgos Tzimiropoulos
9. Darren M. Wells
10. Erik H. Murchie
11. Tony P. Pridmore
12. Andrew P. French
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 12, 2016Latest activity Jan 13, 2022
iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D

This article has 6 authors:
1. Vaja Liluashvili
2. Selim Kalayci
3. Eugene Fluder
4. Manda Wilson
5. Aaron Gabow
6. Zeynep H. Gümüş
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 15, 2017Latest activity Jan 13, 2022
A recurrence-based approach for validating structural variation using long-read sequencing technology

This article has 3 authors:
1. Xuefang Zhao
2. Alexandra M. Weber
3. Ryan E. Mills
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 19, 2017Latest activity Jan 13, 2022
A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation

This article has 4 authors:
1. Peter R. Sternes
2. Danna Lee
3. Dariusz R. Kutyna
4. Anthony R. Borneman
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 8, 2017Latest activity Jan 13, 2022
Multi-locus and long amplicon sequencing approach to study microbial diversity at species level using the MinION™ portable nanopore sequencer

This article has 2 authors:
1. Alfonso Benítez-Páez
2. Yolanda Sanz
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 8, 2017Latest activity Jan 13, 2022
16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

This article has 3 authors:
1. Ruibang Luo
2. Michael C. Schatz
3. Steven L. Salzberg
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 15, 2017Latest activity Jan 13, 2022
Kronos: a workflow assembler for genome analytics and informatics

This article has 10 authors:
1. M. Jafar Taghiyar
2. Jamie Rosner
3. Diljot Grewal
4. Bruno M. Grande
5. Radhouane Aniba
6. Jasleen Grewal
7. Paul C. Boutros
8. Ryan D. Morin
9. Ali Bashashati
10. Sohrab P. Shah
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 26, 2017Latest activity Jan 13, 2022
Bio-Docklets: virtualization containers for single-step execution of NGS pipelines

This article has 5 authors:
1. Baekdoo Kim
2. Thahmina Ali
3. Carlos Lijeron
4. Enis Afgan
5. Konstantinos Krampis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 27, 2017Latest activity Jan 13, 2022
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

This article has 25 authors:
1. Boris Simovski
2. Daniel Vodák
3. Sveinung Gundersen
4. Diana Domanska
5. Abdulrahman Azab
6. Lars Holden
7. Marit Holden
8. Ivar Grytten
9. Knut Rand
10. Finn Drabløs
11. Morten Johansen
12. Antonio Mora
13. Christin Lund-Andersen
14. Bastian Fromm
15. Ragnhild Eskeland
16. Odd Stokke Gabrielsen
17. Egil Ferkingstad
18. Sigve Nakken
19. Mads Bengtsen
20. Alexander Johan Nederbragt
21. Hildur Sif Thorarensen
22. Johannes Andreas Akse
23. Ingrid Glad
24. Eivind Hovig
25. Geir Kjetil Sandve
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 27, 2017Latest activity Jan 13, 2022
Enhancing knowledge discovery from cancer genomics data with Galaxy

This article has 10 authors:
1. Marco A. Albuquerque
2. Bruno M. Grande
3. Elie J. Ritch
4. Prasath Pararajalingam
5. Selin Jessa
6. Martin Krzywinski
7. Jasleen K. Grewal
8. Sohrab P. Shah
9. Paul C. Boutros
10. Ryan D. Morin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 9, 2017Latest activity Jan 13, 2022
NanoSim: nanopore sequence read simulator based on statistical characterization

This article has 4 authors:
1. Chen Yang
2. Justin Chu
3. René L Warren
4. Inanç Birol
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 18, 2016Latest activity Jan 13, 2022
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

This article has 16 authors:
1. Benjamin Istace
2. Anne Friedrich
3. Léo d’Agata
4. Sébastien Faye
5. Emilie Payen
6. Odette Beluche
7. Claudia Caradec
8. Sabrina Davidas
9. Corinne Cruaud
10. Gianni Liti
11. Arnaud Lemainque
12. Stefan Engelen
13. Stefan Engelen
14. Patrick Wincker
15. Joseph Schacherer
16. Jean-Marc Aury
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 28, 2016Latest activity Jan 13, 2022

Evaluated articles

Draft genome of the reindeer ( Rangifer tarandus )

Conventional and hyperspectral time-series imaging of maize lines widely used in field trials

Construction of the third-generation Zea mays haplotype map

MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle

The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

Indexcov: fast coverage quality control for whole-genome sequencing

High precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization

fastBMA: Scalable Network Inference and Transitive Reduction

Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping

iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D

A recurrence-based approach for validating structural variation using long-read sequencing technology

A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation

Multi-locus and long amplicon sequencing approach to study microbial diversity at species level using the MinION™ portable nanopore sequencer

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

Kronos: a workflow assembler for genome analytics and informatics

Bio-Docklets: virtualization containers for single-step execution of NGS pipelines

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

Enhancing knowledge discovery from cancer genomics data with Galaxy

NanoSim: nanopore sequence read simulator based on statistical characterization

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer