Evaluated articles

Showing page 15 of 19 pages of list content

PhenoMeNal: processing and analysis of metabolomics data in the cloud

This article has 56 authors:
1. Kristian Peters
2. James Bradbury
3. Sven Bergmann
4. Marco Capuccini
5. Marta Cascante
6. Pedro de Atauri
7. Timothy M D Ebbels
8. Carles Foguet
9. Robert Glen
10. Alejandra Gonzalez-Beltran
11. Ulrich L Günther
12. Evangelos Handakas
13. Thomas Hankemeier
14. Kenneth Haug
15. Stephanie Herman
16. Petr Holub
17. Massimiliano Izzo
18. Daniel Jacob
19. David Johnson
20. Fabien Jourdan
21. Namrata Kale
22. Ibrahim Karaman
23. Bita Khalili
24. Payam Emami Khonsari
25. Kim Kultima
26. Samuel Lampa
27. Anders Larsson
28. Christian Ludwig
29. Pablo Moreno
30. Steffen Neumann
31. Jon Ander Novella
32. Claire O'Donovan
33. Jake T M Pearce
34. Alina Peluso
35. Marco Enrico Piras
36. Luca Pireddu
37. Michelle A C Reed
38. Philippe Rocca-Serra
39. Pierrick Roger
40. Antonio Rosato
41. Rico Rueedi
42. Christoph Ruttkies
43. Noureddin Sadawi
44. Reza M Salek
45. Susanna-Assunta Sansone
46. Vitaly Selivanov
47. Ola Spjuth
48. Daniel Schober
49. Etienne A Thévenot
50. Mattia Tomasoni
51. Merlijn van Rijswijk
52. Michael van Vliet
53. Mark R Viant
54. Ralf J M Weber
55. Gianluigi Zanetti
56. Christoph Steinbeck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 7, 2018Latest activity Jan 22, 2022
Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data

This article has 5 authors:
1. Fadhl M Al-Akwaa
2. Breck Yunits
3. Sijia Huang
4. Hassam Alhajaji
5. Lana X Garmire
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2018Latest activity Jan 22, 2022
BLINK: a package for the next level of genome-wide association studies with both individuals and markers in the millions

This article has 5 authors:
1. Meng Huang
2. Xiaolei Liu
3. Yao Zhou
4. Ryan M Summers
5. Zhiwu Zhang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 11, 2018Latest activity Jan 22, 2022
Efficient and accurate detection of splice junctions from RNAseq with Portcullis

This article has 4 authors:
1. Daniel Mapleson
2. Luca Venturini
3. Gemy Kaithakottil
4. David Swarbreck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 10, 2017Latest activity Jan 22, 2022
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

This article has 3 authors:
1. Lisa K Johnson
2. Harriet Alexander
3. C Titus Brown
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 13, 2018Latest activity Jan 22, 2022
Ximmer: a system for improving accuracy and consistency of CNV calling from exome data

This article has 4 authors:
1. Simon P Sadedin
2. Justine A Ellis
3. Seth L Masters
4. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 6, 2018Latest activity Jan 22, 2022
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

This article has 20 authors:
1. Zhouchun Shang
2. Dongsheng Chen
3. Quanlei Wang
4. Shengpeng Wang
5. Qiuting Deng
6. Liang Wu
7. Chuanyu Liu
8. Xiangning Ding
9. Shiyou Wang
10. Jixing Zhong
11. Doudou Zhang
12. Xiaodong Cai
13. Shida Zhu
14. Huanming Yang
15. Longqi Liu
16. J Lynn Fink
17. Fang Chen
18. Xiaoqing Liu
19. Zhengliang Gao
20. Xun Xu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 18, 2018Latest activity Jan 22, 2022
Monitoring changes in the Gene Ontology and their impact on genomic data analysis

This article has 3 authors:
1. Matthew Jacobson
2. Adriana Estela Sedeño-Cortés
3. Paul Pavlidis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2018Latest activity Jan 22, 2022
Imaging tissues and cells beyond the diffraction limit with structured illumination microscopy and Bayesian image reconstruction

This article has 6 authors:
1. Jakub Pospíšil
2. Tomáš Lukeš
3. Justin Bendesky
4. Karel Fliegel
5. Kathrin Spendier
6. Guy M. Hagen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 25, 2018Latest activity Jan 22, 2022
PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics

This article has 11 authors:
1. Jie Zheng
2. Tom G Richardson
3. Louise A C Millard
4. Gibran Hemani
5. Benjamin L Elsworth
6. Christopher A Raistrick
7. Bjarni Vilhjalmsson
8. Benjamin M Neale
9. Philip C Haycock
10. George Davey Smith
11. Tom R Gaunt
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2018Latest activity Jan 22, 2022
ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes

This article has 3 authors:
1. Sung-Huan Yu
2. Jörg Vogel
3. Konrad U Förstner
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 30, 2018Latest activity Jan 22, 2022
Clinker: visualizing fusion genes detected in RNA-seq data

This article has 7 authors:
1. Breon M Schmidt
2. Nadia M Davidson
3. Anthony D K Hawkins
4. Ray Bartolo
5. Ian J Majewski
6. Paul G Ekert
7. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution

This article has 7 authors:
1. Li Charlie Xia
2. Dongmei Ai
3. Hojoon Lee
4. Noemi Andor
5. Chao Li
6. Nancy R Zhang
7. Hanlee P Ji
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Clustering trees: a visualization for evaluating clusterings at multiple resolutions

This article has 2 authors:
1. Luke Zappia
2. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye

This article has 11 authors:
1. Jang-il Sohn
2. Kyoungwoo Nam
3. Hyosun Hong
4. Jun-Mo Kim
5. Dajeong Lim
6. Kyung-Tai Lee
7. Yoon Jung Do
8. Chang Yeon Cho
9. Namshin Kim
10. Han-Ha Chai
11. Jin-Wu Nam
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Leveraging multiple transcriptome assembly methods for improved gene structure annotation

This article has 5 authors:
1. Luca Venturini
2. Shabhonam Caim
3. Gemy George Kaithakottil
4. Daniel Lee Mapleson
5. David Swarbreck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 24, 2018Latest activity Jan 22, 2022
Hot-starting software containers for STAR aligner

This article has 4 authors:
1. Pai Zhang
2. Ling-Hong Hung
3. Wes Lloyd
4. Ka Yee Yeung
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 31, 2018Latest activity Jan 22, 2022
AMBER: Assessment of Metagenome BinnERs

This article has 7 authors:
1. Fernando Meyer
2. Peter Hofmann
3. Peter Belmann
4. Ruben Garrido-Oter
5. Adrian Fritz
6. Alexander Sczyrba
7. Alice C McHardy
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2018Latest activity Jan 22, 2022
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data

This article has 9 authors:
1. L M Simon
2. S Karg
3. A J Westermann
4. M Engel
5. A H A Elbehery
6. B Hense
7. M Heinig
8. L Deng
9. F J Theis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2018Latest activity Jan 22, 2022
YAMP: a containerized workflow enabling reproducibility in metagenomics research

This article has 3 authors:
1. Alessia Visconti
2. Tiphaine C Martin
3. Mario Falchi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 18, 2018Latest activity Jan 22, 2022