Evaluated articles

Showing page 15 of 22 pages of list content

Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples

This article has 5 authors:
1. Rafael R C Cuadrat
2. Maria Sorokina
3. Bruno G Andrade
4. Tobias Goris
5. Alberto M R Dávila
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2020Latest activity Jan 24, 2022
The Gene-Rich Genome of the Scallop Pecten maximus

This article has 21 authors:
1. Nathan J Kenny
2. Shane A McCarthy
3. Olga Dudchenko
4. Katherine James
5. Emma Betteridge
6. Craig Corton
7. Jale Dolucan
8. Dan Mead
9. Karen Oliver
10. Arina D Omer
11. Sarah Pelan
12. Yan Ryan
13. Ying Sims
14. Jason Skelton
15. Michelle Smith
16. James Torrance
17. David Weisz
18. Anil Wipat
19. Erez L Aiden
20. Kerstin Howe
21. Suzanne T Williams
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 9, 2020Latest activity Jan 24, 2022
Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry

This article has 7 authors:
1. Mitchell J Feldmann
2. Michael A Hardigan
3. Randi A Famula
4. Cindy M López
5. Amy Tabb
6. Glenn S Cole
7. Steven J Knapp
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 30, 2020Latest activity Jan 24, 2022
Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction

This article has 2 authors:
1. Karl A Johnson
2. Guy M Hagen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2020Latest activity Jan 23, 2022
Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

This article has 7 authors:
1. Marco Antonio Tangaro
2. Giacinto Donvito
3. Marica Antonacci
4. Matteo Chiara
5. Pietro Mandreoli
6. Graziano Pesole
7. Federico Zambelli
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2020Latest activity Jan 23, 2022
ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

This article has 4 authors:
1. Stephen R Piccolo
2. Terry J Lee
3. Erica Suh
4. Kimball Hill
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2020Latest activity Jan 23, 2022
Binning unassembled short reads based on k -mer abundance covariance using sparse coding

This article has 5 authors:
1. Olexiy Kyrgyzov
2. Vincent Prost
3. Stéphane Gazut
4. Bruno Farcy
5. Thomas Brüls
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 29, 2020Latest activity Jan 23, 2022
Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

This article has 7 authors:
1. Thomas McGowan
2. James E Johnson
3. Praveen Kumar
4. Ray Sajulga
5. Subina Mehta
6. Pratik D Jagtap
7. Timothy J Griffin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 28, 2020Latest activity Jan 23, 2022
Interpretable and accurate prediction models for metagenomics data

This article has 7 authors:
1. Edi Prifti
2. Yann Chevaleyre
3. Blaise Hanczar
4. Eugeni Belda
5. Antoine Danchin
6. Karine Clément
7. Jean-Daniel Zucker
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 1, 2020Latest activity Jan 23, 2022
GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

This article has 5 authors:
1. Ekaterina Noskova
2. Vladimir Ulyantsev
3. Klaus-Peter Koepfli
4. Stephen J O'Brien
5. Pavel Dobrynin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 29, 2020Latest activity Jan 23, 2022
Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

This article has 2 authors:
1. Zheng Li
2. Michael S Barker
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

This article has 14 authors:
1. Jerven Bolleman
2. Edouard de Castro
3. Delphine Baratin
4. Sebastien Gehant
5. Beatrice A Cuche
6. Andrea H Auchincloss
7. Elisabeth Coudert
8. Chantal Hulo
9. Patrick Masson
10. Ivo Pedruzzi
11. Catherine Rivoire
12. Ioannis Xenarios
13. Nicole Redaschi
14. Alan Bridge
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
The Data Tags Suite (DATS) model for discovering data access and use requirements

This article has 4 authors:
1. George Alter
2. Alejandra Gonzalez-Beltran
3. Lucila Ohno-Machado
4. Philippe Rocca-Serra
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

This article has 10 authors:
1. Stephen J Bush
2. Dona Foster
3. David W Eyre
4. Emily L Clark
5. Nicola De Maio
6. Liam P Shaw
7. Nicole Stoesser
8. Tim E A Peto
9. Derrick W Crook
10. A Sarah Walker
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing

This article has 7 authors:
1. Miranda E Pitt
2. Son H Nguyen
3. Tânia P S Duarte
4. Haotian Teng
5. Mark A T Blaskovich
6. Matthew A Cooper
7. Lachlan J M Coin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 1, 2020Latest activity Jan 23, 2022
Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?

This article has 6 authors:
1. Mitsutaka Kadota
2. Osamu Nishimura
3. Hisashi Miura
4. Kaori Tanaka
5. Ichiro Hiratani
6. Shigehiro Kuraku
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 1, 2020Latest activity Jan 23, 2022
The draft nuclear genome assembly of Eucalyptus pauciflora : a pipeline for comparing de novo assemblies

This article has 7 authors:
1. Weiwen Wang
2. Ashutosh Das
3. David Kainer
4. Miriam Schalamun
5. Alejandro Morales-Suarez
6. Benjamin Schwessinger
7. Robert Lanfear
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 1, 2020Latest activity Jan 23, 2022
Assessment of human diploid genome assembly with 10x Linked-Reads data

This article has 4 authors:
1. Lu Zhang
2. Xin Zhou
3. Ziming Weng
4. Arend Sidow
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2019Latest activity Jan 23, 2022
High-throughput phenotyping with deep learning gives insight into the genetic architecture of flowering time in wheat

This article has 6 authors:
1. Xu Wang
2. Hong Xuan
3. Byron Evers
4. Sandesh Shrestha
5. Robert Pless
6. Jesse Poland
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2019Latest activity Jan 23, 2022
RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements

This article has 3 authors:
1. Ekaterina Osipova
2. Nikolai Hecker
3. Michael Hiller
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2019Latest activity Jan 23, 2022

Evaluated articles

Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples

The Gene-Rich Genome of the Scallop Pecten maximus

Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry

Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction

Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

Binning unassembled short reads based on k -mer abundance covariance using sparse coding

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

Interpretable and accurate prediction models for metagenomics data

GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

The Data Tags Suite (DATS) model for discovering data access and use requirements

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing

Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?

The draft nuclear genome assembly of Eucalyptus pauciflora : a pipeline for comparing de novo assemblies

Assessment of human diploid genome assembly with 10x Linked-Reads data

High-throughput phenotyping with deep learning gives insight into the genetic architecture of flowering time in wheat

RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements