Evaluated articles

Showing page 15 of 20 pages of list content

Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

This article has 5 authors:
1. Dimitrios Voukantsis
2. Kenneth Kahn
3. Martin Hadley
4. Rowan Wilson
5. Francesca M. Buffa
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 16, 2019Latest activity Jan 23, 2022
CropSight: a scalable and open-source information management system for distributed plant phenotyping and IoT-based crop management

This article has 6 authors:
1. Daniel Reynolds
2. Joshua Ball
3. Alan Bauer
4. Robert Davey
5. Simon Griffiths
6. Ji Zhou
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 31, 2019Latest activity Jan 23, 2022
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

This article has 13 authors:
1. Ye Peng
2. Shanmei Tang
3. Dan Wang
4. Huanzi Zhong
5. Huijue Jia
6. Xianghang Cai
7. Zhaoxi Zhang
8. Minfeng Xiao
9. Huanming Yang
10. Jian Wang
11. Karsten Kristiansen
12. Xun Xu
13. Junhua Li
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 2, 2018Latest activity Jan 22, 2022
PiGx: reproducible genomics analysis pipelines with GNU Guix

This article has 8 authors:
1. Ricardo Wurmus
2. Bora Uyar
3. Brendan Osberg
4. Vedran Franke
5. Alexander Gosdschan
6. Katarzyna Wreczycka
7. Jonathan Ronen
8. Altuna Akalin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 2, 2018Latest activity Jan 22, 2022
Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

This article has 11 authors:
1. Ellie E. Armstrong
2. Ryan W. Taylor
3. Stefan Prost
4. Peter Blinston
5. Esther van der Meer
6. Hillary Madzikanda
7. Olivia Mufute
8. Roseline Mandisodza
9. John Stuelpnagel
10. Claudio Sillero-Zubiri
11. Dmitri Petrov
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 27, 2017Latest activity Jan 22, 2022
Aequatus: an open-source homology browser

This article has 5 authors:
1. Anil S Thanki
2. Nicola Soranzo
3. Javier Herrero
4. Wilfried Haerty
5. Robert P Davey
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2018Latest activity Jan 22, 2022
NAT/NCS2-hound: a webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family

This article has 10 authors:
1. A Chaliotis
2. P Vlastaridis
3. C Ntountoumi
4. M Botou
5. V Yalelis
6. P Lazou
7. E Tatsaki
8. D Mossialos
9. S Frillingos
10. G D Amoutzias
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 10, 2018Latest activity Jan 22, 2022
Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism

This article has 10 authors:
1. Xiaofeng Dong
2. Kittipong Chaisiri
3. Dong Xia
4. Stuart D Armstrong
5. Yongxiang Fang
6. Martin J Donnelly
7. Tatsuhiko Kadowaki
8. John W McGarry
9. Alistair C Darby
10. Benjamin L Makepeace
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 15, 2018Latest activity Jan 22, 2022
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

This article has 3 authors:
1. Szymon T Calus
2. Umer Z Ijaz
3. Ameet J Pinto
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 23, 2018Latest activity Jan 22, 2022
SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow ( Hirundo rustica rustica )

This article has 9 authors:
1. Giulio Formenti
2. Matteo Chiara
3. Lucy Poveda
4. Kees-Jan Francoijs
5. Andrea Bonisoli-Alquati
6. Luca Canova
7. Luca Gianfranceschi
8. David Stephen Horner
9. Nicola Saino
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 29, 2018Latest activity Jan 22, 2022
A network-based conditional genetic association analysis of the human metabolome

This article has 11 authors:
1. Y A Tsepilov
2. S Z Sharapov
3. O O Zaytseva
4. J Krumsek
5. C Prehn
6. J Adamski
7. G Kastenmüller
8. R Wang-Sattler
9. K Strauch
10. C Gieger
11. Y S Aulchenko
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 29, 2018Latest activity Jan 22, 2022
A databank for intracellular electrophysiological mapping of the adult somatosensory cortex

This article has 9 authors:
1. Angelica da Silva Lantyer
2. Niccolò Calcini
3. Ate Bijlsma
4. Koen Kole
5. Melanie Emmelkamp
6. Manon Peeters
7. Wim J J Scheenen
8. Fleur Zeldenrust
9. Tansu Celikel
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2018Latest activity Jan 22, 2022
Prot-SpaM : fast alignment-free phylogeny reconstruction based on whole-proteome sequences

This article has 6 authors:
1. Chris-Andre Leimeister
2. Jendrik Schellhorn
3. Svenja Dörrer
4. Michael Gerth
5. Christoph Bleidorn
6. Burkhard Morgenstern
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 7, 2018Latest activity Jan 22, 2022
PhenoMeNal: processing and analysis of metabolomics data in the cloud

This article has 56 authors:
1. Kristian Peters
2. James Bradbury
3. Sven Bergmann
4. Marco Capuccini
5. Marta Cascante
6. Pedro de Atauri
7. Timothy M D Ebbels
8. Carles Foguet
9. Robert Glen
10. Alejandra Gonzalez-Beltran
11. Ulrich L Günther
12. Evangelos Handakas
13. Thomas Hankemeier
14. Kenneth Haug
15. Stephanie Herman
16. Petr Holub
17. Massimiliano Izzo
18. Daniel Jacob
19. David Johnson
20. Fabien Jourdan
21. Namrata Kale
22. Ibrahim Karaman
23. Bita Khalili
24. Payam Emami Khonsari
25. Kim Kultima
26. Samuel Lampa
27. Anders Larsson
28. Christian Ludwig
29. Pablo Moreno
30. Steffen Neumann
31. Jon Ander Novella
32. Claire O'Donovan
33. Jake T M Pearce
34. Alina Peluso
35. Marco Enrico Piras
36. Luca Pireddu
37. Michelle A C Reed
38. Philippe Rocca-Serra
39. Pierrick Roger
40. Antonio Rosato
41. Rico Rueedi
42. Christoph Ruttkies
43. Noureddin Sadawi
44. Reza M Salek
45. Susanna-Assunta Sansone
46. Vitaly Selivanov
47. Ola Spjuth
48. Daniel Schober
49. Etienne A Thévenot
50. Mattia Tomasoni
51. Merlijn van Rijswijk
52. Michael van Vliet
53. Mark R Viant
54. Ralf J M Weber
55. Gianluigi Zanetti
56. Christoph Steinbeck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 7, 2018Latest activity Jan 22, 2022
Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data

This article has 5 authors:
1. Fadhl M Al-Akwaa
2. Breck Yunits
3. Sijia Huang
4. Hassam Alhajaji
5. Lana X Garmire
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2018Latest activity Jan 22, 2022
BLINK: a package for the next level of genome-wide association studies with both individuals and markers in the millions

This article has 5 authors:
1. Meng Huang
2. Xiaolei Liu
3. Yao Zhou
4. Ryan M Summers
5. Zhiwu Zhang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 11, 2018Latest activity Jan 22, 2022
Efficient and accurate detection of splice junctions from RNAseq with Portcullis

This article has 4 authors:
1. Daniel Mapleson
2. Luca Venturini
3. Gemy Kaithakottil
4. David Swarbreck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 10, 2017Latest activity Jan 22, 2022
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

This article has 3 authors:
1. Lisa K Johnson
2. Harriet Alexander
3. C Titus Brown
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 13, 2018Latest activity Jan 22, 2022
Ximmer: a system for improving accuracy and consistency of CNV calling from exome data

This article has 4 authors:
1. Simon P Sadedin
2. Justine A Ellis
3. Seth L Masters
4. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 6, 2018Latest activity Jan 22, 2022
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

This article has 20 authors:
1. Zhouchun Shang
2. Dongsheng Chen
3. Quanlei Wang
4. Shengpeng Wang
5. Qiuting Deng
6. Liang Wu
7. Chuanyu Liu
8. Xiangning Ding
9. Shiyou Wang
10. Jixing Zhong
11. Doudou Zhang
12. Xiaodong Cai
13. Shida Zhu
14. Huanming Yang
15. Longqi Liu
16. J Lynn Fink
17. Fang Chen
18. Xiaoqing Liu
19. Zhengliang Gao
20. Xun Xu
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 18, 2018Latest activity Jan 22, 2022

Evaluated articles

Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

CropSight: a scalable and open-source information management system for distributed plant phenotyping and IoT-based crop management

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

PiGx: reproducible genomics analysis pipelines with GNU Guix

Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

Aequatus: an open-source homology browser

NAT/NCS2-hound: a webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family

Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow ( Hirundo rustica rustica )

A network-based conditional genetic association analysis of the human metabolome

A databank for intracellular electrophysiological mapping of the adult somatosensory cortex

Prot-SpaM : fast alignment-free phylogeny reconstruction based on whole-proteome sequences

PhenoMeNal: processing and analysis of metabolomics data in the cloud

Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data

BLINK: a package for the next level of genome-wide association studies with both individuals and markers in the millions

Efficient and accurate detection of splice junctions from RNAseq with Portcullis

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

Ximmer: a system for improving accuracy and consistency of CNV calling from exome data

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation