Evaluated articles

Showing page 16 of 19 pages of list content

Arabidopsis phenotyping through geometric morphometrics

This article has 2 authors:
1. Carlos A Manacorda
2. Sebastian Asurmendi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 18, 2018Latest activity Jan 22, 2022
Experimenting with reproducibility: a case study of robustness in bioinformatics

This article has 3 authors:
1. Yang-Min Kim
2. Jean-Baptiste Poline
3. Guillaume Dumas
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 28, 2018Latest activity Jan 22, 2022
Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

This article has 2 authors:
1. Nadia M Davidson
2. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022
Fast-SG: an alignment-free algorithm for hybrid assembly

This article has 4 authors:
1. Alex Di Genova
2. Gonzalo A Ruz
3. Marie-France Sagot
4. Alejandro Maass
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022
Independent assessment and improvement of wheat genome sequence assemblies using Fosill jumping libraries

This article has 6 authors:
1. Fu-Hao Lu
2. Neil McKenzie
3. George Kettleborough
4. Darren Heavens
5. Matthew D Clark
6. Michael W Bevan
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022
ASaiM: a Galaxy-based framework to analyze microbiota data

This article has 7 authors:
1. Bérénice Batut
2. Kévin Gravouil
3. Clémence Defois
4. Saskia Hiltemann
5. Jean-François Brugère
6. Eric Peyretaillade
7. Pierre Peyret
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 15, 2018Latest activity Jan 22, 2022
Error correcting optical mapping data

This article has 5 authors:
1. Kingshuk Mukherjee
2. Darshan Washimkar
3. Martin D Muggli
4. Leena Salmela
5. Christina Boucher
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 25, 2018Latest activity Jan 22, 2022
zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

This article has 5 authors:
1. Swati Parekh
2. Christoph Ziegenhain
3. Beate Vieth
4. Wolfgang Enard
5. Ines Hellmann
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 26, 2018Latest activity Jan 22, 2022
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants

This article has 10 authors:
1. Jonathan R Belyeu
2. Thomas J Nicholas
3. Brent S Pedersen
4. Thomas A Sasani
5. James M Havrilla
6. Stephanie N Kravitz
7. Megan E Conway
8. Brian K Lohman
9. Aaron R Quinlan
10. Ryan M Layer
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 31, 2018Latest activity Jan 22, 2022
Improving the annotation of the Heterorhabditis bacteriophora genome

This article has 5 authors:
1. Florence McLean
2. Duncan Berger
3. Dominik R Laetsch
4. Hillel T Schwartz
5. Mark Blaxter
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Apr 1, 2018Latest activity Aug 9, 2022
Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

This article has 9 authors:
1. Aaron Pomerantz
2. Nicolás Peñafiel
3. Alejandro Arteaga
4. Lucas Bustamante
5. Frank Pichardo
6. Luis A Coloma
7. César L Barrio-Amorós
8. David Salazar-Valenzuela
9. Stefan Prost
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2018Latest activity Jan 22, 2022
Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

This article has 6 authors:
1. Haotian Teng
2. Minh Duc Cao
3. Michael B Hall
4. Tania Duarte
5. Sheng Wang
6. Lachlan J M Coin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 10, 2018Latest activity Jan 22, 2022
Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria

This article has 4 authors:
1. Harry A Thorpe
2. Sion C Bayliss
3. Samuel K Sheppard
4. Edward J Feil
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 4, 2018Latest activity Jan 22, 2022
Innovative assembly strategy contributes to the understanding of evolution and conservation genetics of the critically endangered Solenodon paradoxus from the island of Hispaniola

This article has 19 authors:
1. Kirill Grigorev
2. Sergey Kliver
3. Pavel Dobrynin
4. Aleksey Komissarov
5. Walter Wolfsberger
6. Ksenia Krasheninnikova
7. Yashira M. Afanador-Hernández
8. Liz A. Paulino
9. Rosanna Carreras
10. Luis E. Rodríguez
11. Adrell Núñez
12. Filipe Silva
13. J. David Hernández-Martich
14. Audrey J. Majeske
15. Agostinho Antunes
16. Alfred L. Roca
17. Stephen J. O’Brien
18. Juan Carlos Martinez-Cruzado
19. Taras K. Oleksyk
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 3, 2017Latest activity Jan 22, 2022
Advanced lesion symptom mapping analyses and implementation as BCBtoolkit

This article has 8 authors:
1. C Foulon
2. L Cerliani
3. S Kinkingnéhun
4. R Levy
5. C Rosso
6. M Urbanski
7. E Volle
8. M Thiebaut de Schotten
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 26, 2018Latest activity Jan 22, 2022
Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris

This article has 6 authors:
1. Rachael E Workman
2. Alexander M Myrka
3. G William Wong
4. Elizabeth Tseng
5. Kenneth C Welch
6. Winston Timp
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 15, 2018Latest activity Jan 22, 2022
Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data

This article has 9 authors:
1. Quan H Nguyen
2. Ross L Tellam
3. Marina Naval-Sanchez
4. Laercio R Porto-Neto
5. William Barendse
6. Antonio Reverter
7. Benjamin Hayes
8. James Kijas
9. Brian P Dalrymple
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Feb 16, 2018Latest activity Jan 22, 2022
Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

This article has 19 authors:
1. Jason R Miller
2. Sergey Koren
3. Kari A Dilley
4. Vinita Puri
5. David M Brown
6. Derek M Harkins
7. Françoise Thibaud-Nissen
8. Benjamin Rosen
9. Xiao-Guang Chen
10. Zhijian Tu
11. Igor V Sharakhov
12. Maria V Sharakhova
13. Robert Sebra
14. Timothy B Stockwell
15. Nicholas H Bergman
16. Granger G Sutton
17. Adam M Phillippy
18. Peter M Piermarini
19. Reed S Shabman
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 10, 2018Latest activity Jan 21, 2022
Quantitative super-resolution single molecule microscopy dataset of YFP-tagged growth factor receptors

This article has 5 authors:
1. Tomáš Lukeš
2. Jakub Pospíšil
3. Karel Fliegel
4. Theo Lasser
5. Guy M Hagen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 19, 2018Latest activity Jan 21, 2022
HOMINID: a framework for identifying associations between host genetic variation and microbiome composition

This article has 9 authors:
1. Joshua Lynch
2. Karen Tang
3. Sambhawa Priya
4. Joanna Sands
5. Margaret Sands
6. Evan Tang
7. Sayan Mukherjee
8. Dan Knights
9. Ran Blekhman
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Nov 8, 2017Latest activity Mar 14, 2022

Evaluated articles

Arabidopsis phenotyping through geometric morphometrics

Experimenting with reproducibility: a case study of robustness in bioinformatics

Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

Fast-SG: an alignment-free algorithm for hybrid assembly

Independent assessment and improvement of wheat genome sequence assemblies using Fosill jumping libraries

ASaiM: a Galaxy-based framework to analyze microbiota data

Error correcting optical mapping data

zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

SV-plaudit: A cloud-based framework for manually curating thousands of structural variants

Improving the annotation of the Heterorhabditis bacteriophora genome

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria

Innovative assembly strategy contributes to the understanding of evolution and conservation genetics of the critically endangered Solenodon paradoxus from the island of Hispaniola

Advanced lesion symptom mapping analyses and implementation as BCBtoolkit

Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris

Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

Quantitative super-resolution single molecule microscopy dataset of YFP-tagged growth factor receptors

HOMINID: a framework for identifying associations between host genetic variation and microbiome composition