Evaluated articles

Showing page 16 of 20 pages of list content

Monitoring changes in the Gene Ontology and their impact on genomic data analysis

This article has 3 authors:
1. Matthew Jacobson
2. Adriana Estela Sedeño-Cortés
3. Paul Pavlidis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2018Latest activity Jan 22, 2022
Imaging tissues and cells beyond the diffraction limit with structured illumination microscopy and Bayesian image reconstruction

This article has 6 authors:
1. Jakub Pospíšil
2. Tomáš Lukeš
3. Justin Bendesky
4. Karel Fliegel
5. Kathrin Spendier
6. Guy M. Hagen
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 25, 2018Latest activity Jan 22, 2022
PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics

This article has 11 authors:
1. Jie Zheng
2. Tom G Richardson
3. Louise A C Millard
4. Gibran Hemani
5. Benjamin L Elsworth
6. Christopher A Raistrick
7. Bjarni Vilhjalmsson
8. Benjamin M Neale
9. Philip C Haycock
10. George Davey Smith
11. Tom R Gaunt
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 1, 2018Latest activity Jan 22, 2022
ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes

This article has 3 authors:
1. Sung-Huan Yu
2. Jörg Vogel
3. Konrad U Förstner
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Aug 30, 2018Latest activity Jan 22, 2022
Clinker: visualizing fusion genes detected in RNA-seq data

This article has 7 authors:
1. Breon M Schmidt
2. Nadia M Davidson
3. Anthony D K Hawkins
4. Ray Bartolo
5. Ian J Majewski
6. Paul G Ekert
7. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution

This article has 7 authors:
1. Li Charlie Xia
2. Dongmei Ai
3. Hojoon Lee
4. Noemi Andor
5. Chao Li
6. Nancy R Zhang
7. Hanlee P Ji
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Clustering trees: a visualization for evaluating clusterings at multiple resolutions

This article has 2 authors:
1. Luke Zappia
2. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye

This article has 11 authors:
1. Jang-il Sohn
2. Kyoungwoo Nam
3. Hyosun Hong
4. Jun-Mo Kim
5. Dajeong Lim
6. Kyung-Tai Lee
7. Yoon Jung Do
8. Chang Yeon Cho
9. Namshin Kim
10. Han-Ha Chai
11. Jin-Wu Nam
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Leveraging multiple transcriptome assembly methods for improved gene structure annotation

This article has 5 authors:
1. Luca Venturini
2. Shabhonam Caim
3. Gemy George Kaithakottil
4. Daniel Lee Mapleson
5. David Swarbreck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 24, 2018Latest activity Jan 22, 2022
Hot-starting software containers for STAR aligner

This article has 4 authors:
1. Pai Zhang
2. Ling-Hong Hung
3. Wes Lloyd
4. Ka Yee Yeung
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 31, 2018Latest activity Jan 22, 2022
AMBER: Assessment of Metagenome BinnERs

This article has 7 authors:
1. Fernando Meyer
2. Peter Hofmann
3. Peter Belmann
4. Ruben Garrido-Oter
5. Adrian Fritz
6. Alexander Sczyrba
7. Alice C McHardy
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2018Latest activity Jan 22, 2022
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data

This article has 9 authors:
1. L M Simon
2. S Karg
3. A J Westermann
4. M Engel
5. A H A Elbehery
6. B Hense
7. M Heinig
8. L Deng
9. F J Theis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2018Latest activity Jan 22, 2022
YAMP: a containerized workflow enabling reproducibility in metagenomics research

This article has 3 authors:
1. Alessia Visconti
2. Tiphaine C Martin
3. Mario Falchi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 18, 2018Latest activity Jan 22, 2022
Arabidopsis phenotyping through geometric morphometrics

This article has 2 authors:
1. Carlos A Manacorda
2. Sebastian Asurmendi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 18, 2018Latest activity Jan 22, 2022
Experimenting with reproducibility: a case study of robustness in bioinformatics

This article has 3 authors:
1. Yang-Min Kim
2. Jean-Baptiste Poline
3. Guillaume Dumas
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 28, 2018Latest activity Jan 22, 2022
Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

This article has 2 authors:
1. Nadia M Davidson
2. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022
Fast-SG: an alignment-free algorithm for hybrid assembly

This article has 4 authors:
1. Alex Di Genova
2. Gonzalo A Ruz
3. Marie-France Sagot
4. Alejandro Maass
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022
Independent assessment and improvement of wheat genome sequence assemblies using Fosill jumping libraries

This article has 6 authors:
1. Fu-Hao Lu
2. Neil McKenzie
3. George Kettleborough
4. Darren Heavens
5. Matthew D Clark
6. Michael W Bevan
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022
ASaiM: a Galaxy-based framework to analyze microbiota data

This article has 7 authors:
1. Bérénice Batut
2. Kévin Gravouil
3. Clémence Defois
4. Saskia Hiltemann
5. Jean-François Brugère
6. Eric Peyretaillade
7. Pierre Peyret
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 15, 2018Latest activity Jan 22, 2022
Error correcting optical mapping data

This article has 5 authors:
1. Kingshuk Mukherjee
2. Darshan Washimkar
3. Martin D Muggli
4. Leena Salmela
5. Christina Boucher
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 25, 2018Latest activity Jan 22, 2022