Evaluated articles

Showing page 16 of 19 pages of list content

Clustering trees: a visualization for evaluating clusterings at multiple resolutions

This article has 2 authors:
1. Luke Zappia
2. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye

This article has 11 authors:
1. Jang-il Sohn
2. Kyoungwoo Nam
3. Hyosun Hong
4. Jun-Mo Kim
5. Dajeong Lim
6. Kyung-Tai Lee
7. Yoon Jung Do
8. Chang Yeon Cho
9. Namshin Kim
10. Han-Ha Chai
11. Jin-Wu Nam
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 1, 2018Latest activity Jan 22, 2022
Leveraging multiple transcriptome assembly methods for improved gene structure annotation

This article has 5 authors:
1. Luca Venturini
2. Shabhonam Caim
3. Gemy George Kaithakottil
4. Daniel Lee Mapleson
5. David Swarbreck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 24, 2018Latest activity Jan 22, 2022
Hot-starting software containers for STAR aligner

This article has 4 authors:
1. Pai Zhang
2. Ling-Hong Hung
3. Wes Lloyd
4. Ka Yee Yeung
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 31, 2018Latest activity Jan 22, 2022
AMBER: Assessment of Metagenome BinnERs

This article has 7 authors:
1. Fernando Meyer
2. Peter Hofmann
3. Peter Belmann
4. Ruben Garrido-Oter
5. Adrian Fritz
6. Alexander Sczyrba
7. Alice C McHardy
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2018Latest activity Jan 22, 2022
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data

This article has 9 authors:
1. L M Simon
2. S Karg
3. A J Westermann
4. M Engel
5. A H A Elbehery
6. B Hense
7. M Heinig
8. L Deng
9. F J Theis
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 1, 2018Latest activity Jan 22, 2022
YAMP: a containerized workflow enabling reproducibility in metagenomics research

This article has 3 authors:
1. Alessia Visconti
2. Tiphaine C Martin
3. Mario Falchi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 18, 2018Latest activity Jan 22, 2022
Arabidopsis phenotyping through geometric morphometrics

This article has 2 authors:
1. Carlos A Manacorda
2. Sebastian Asurmendi
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 18, 2018Latest activity Jan 22, 2022
Experimenting with reproducibility: a case study of robustness in bioinformatics

This article has 3 authors:
1. Yang-Min Kim
2. Jean-Baptiste Poline
3. Guillaume Dumas
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jun 28, 2018Latest activity Jan 22, 2022
Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

This article has 2 authors:
1. Nadia M Davidson
2. Alicia Oshlack
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022
Fast-SG: an alignment-free algorithm for hybrid assembly

This article has 4 authors:
1. Alex Di Genova
2. Gonzalo A Ruz
3. Marie-France Sagot
4. Alejandro Maass
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022
Independent assessment and improvement of wheat genome sequence assemblies using Fosill jumping libraries

This article has 6 authors:
1. Fu-Hao Lu
2. Neil McKenzie
3. George Kettleborough
4. Darren Heavens
5. Matthew D Clark
6. Michael W Bevan
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 1, 2018Latest activity Jan 22, 2022
ASaiM: a Galaxy-based framework to analyze microbiota data

This article has 7 authors:
1. Bérénice Batut
2. Kévin Gravouil
3. Clémence Defois
4. Saskia Hiltemann
5. Jean-François Brugère
6. Eric Peyretaillade
7. Pierre Peyret
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 15, 2018Latest activity Jan 22, 2022
Error correcting optical mapping data

This article has 5 authors:
1. Kingshuk Mukherjee
2. Darshan Washimkar
3. Martin D Muggli
4. Leena Salmela
5. Christina Boucher
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 25, 2018Latest activity Jan 22, 2022
zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

This article has 5 authors:
1. Swati Parekh
2. Christoph Ziegenhain
3. Beate Vieth
4. Wolfgang Enard
5. Ines Hellmann
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 26, 2018Latest activity Jan 22, 2022
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants

This article has 10 authors:
1. Jonathan R Belyeu
2. Thomas J Nicholas
3. Brent S Pedersen
4. Thomas A Sasani
5. James M Havrilla
6. Stephanie N Kravitz
7. Megan E Conway
8. Brian K Lohman
9. Aaron R Quinlan
10. Ryan M Layer
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version May 31, 2018Latest activity Jan 22, 2022
Improving the annotation of the Heterorhabditis bacteriophora genome

This article has 5 authors:
1. Florence McLean
2. Duncan Berger
3. Dominik R Laetsch
4. Hillel T Schwartz
5. Mark Blaxter
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Apr 1, 2018Latest activity Aug 9, 2022
Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

This article has 9 authors:
1. Aaron Pomerantz
2. Nicolás Peñafiel
3. Alejandro Arteaga
4. Lucas Bustamante
5. Frank Pichardo
6. Luis A Coloma
7. César L Barrio-Amorós
8. David Salazar-Valenzuela
9. Stefan Prost
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2018Latest activity Jan 22, 2022
Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

This article has 6 authors:
1. Haotian Teng
2. Minh Duc Cao
3. Michael B Hall
4. Tania Duarte
5. Sheng Wang
6. Lachlan J M Coin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 10, 2018Latest activity Jan 22, 2022
Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria

This article has 4 authors:
1. Harry A Thorpe
2. Sion C Bayliss
3. Samuel K Sheppard
4. Edward J Feil
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 4, 2018Latest activity Jan 22, 2022

Evaluated articles

Clustering trees: a visualization for evaluating clusterings at multiple resolutions

Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye

Leveraging multiple transcriptome assembly methods for improved gene structure annotation

Hot-starting software containers for STAR aligner

AMBER: Assessment of Metagenome BinnERs

MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data

YAMP: a containerized workflow enabling reproducibility in metagenomics research

Arabidopsis phenotyping through geometric morphometrics

Experimenting with reproducibility: a case study of robustness in bioinformatics

Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

Fast-SG: an alignment-free algorithm for hybrid assembly

Independent assessment and improvement of wheat genome sequence assemblies using Fosill jumping libraries

ASaiM: a Galaxy-based framework to analyze microbiota data

Error correcting optical mapping data

zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

SV-plaudit: A cloud-based framework for manually curating thousands of structural variants

Improving the annotation of the Heterorhabditis bacteriophora genome

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria