Evaluated articles

Showing page 16 of 21 pages of list content

A multi-omics data simulator for complex disease studies and its application to evaluate multi-omics data analysis methods for disease classification

This article has 2 authors:
1. Ren-Hua Chung
2. Chen-Yu Kang
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 26, 2019Latest activity Jan 23, 2022
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

This article has 4 authors:
1. Samuel Lampa
2. Martin Dahlö
3. Jonathan Alvarsson
4. Ola Spjuth
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Apr 26, 2019Latest activity Jan 23, 2022
A critical comparison of technologies for a plant genome sequencing project

This article has 13 authors:
1. Pirita Paajanen
2. George Kettleborough
3. Elena López-Girona
4. Michael Giolai
5. Darren Heavens
6. David Baker
7. Ashleigh Lister
8. Fiorella Cugliandolo
9. Gail Wilde
10. Ingo Hein
11. Iain Macaulay
12. Glenn J Bryan
13. Matthew D Clark
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 9, 2019Latest activity Jan 23, 2022
Comparative Genomics and Genome Evolution in birds-of-paradise

This article has 12 authors:
1. Stefan Prost
2. Ellie E. Armstrong
3. Johan Nylander
4. Gregg W.C. Thomas
5. Alexander Suh
6. Bent Petersen
7. Love Dalen
8. Brett Benz
9. Mozes P.K. Blom
10. Eleftheria Palkopoulou
11. Per G. P. Ericson
12. Martin Irestedt
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Mar 22, 2018Latest activity Jan 23, 2022
Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat

This article has 10 authors:
1. Laura-Jayne Gardiner
2. Thomas Brabbs
3. Alina Akhunov
4. Katherine Jordan
5. Hikmet Budak
6. Todd Richmond
7. Sukhwinder Singh
8. Leah Catchpole
9. Eduard Akhunov
10. Anthony Hall
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 31, 2019Latest activity Jan 23, 2022
Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

This article has 5 authors:
1. Dimitrios Voukantsis
2. Kenneth Kahn
3. Martin Hadley
4. Rowan Wilson
5. Francesca M. Buffa
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jul 3, 2018Latest activity Jan 23, 2022
CropSight: a scalable and open-source information management system for distributed plant phenotyping and IoT-based crop management

This article has 6 authors:
1. Daniel Reynolds
2. Joshua Ball
3. Alan Bauer
4. Robert Davey
5. Simon Griffiths
6. Ji Zhou
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Jan 31, 2019Latest activity Jan 23, 2022
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

This article has 13 authors:
1. Ye Peng
2. Shanmei Tang
3. Dan Wang
4. Huanzi Zhong
5. Huijue Jia
6. Xianghang Cai
7. Zhaoxi Zhang
8. Minfeng Xiao
9. Huanming Yang
10. Jian Wang
11. Karsten Kristiansen
12. Xun Xu
13. Junhua Li
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 2, 2018Latest activity Jan 22, 2022
PiGx: reproducible genomics analysis pipelines with GNU Guix

This article has 8 authors:
1. Ricardo Wurmus
2. Bora Uyar
3. Brendan Osberg
4. Vedran Franke
5. Alexander Gosdschan
6. Katarzyna Wreczycka
7. Jonathan Ronen
8. Altuna Akalin
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Oct 2, 2018Latest activity Jan 22, 2022
Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

This article has 11 authors:
1. Ellie E. Armstrong
2. Ryan W. Taylor
3. Stefan Prost
4. Peter Blinston
5. Esther van der Meer
6. Hillary Madzikanda
7. Olivia Mufute
8. Roseline Mandisodza
9. John Stuelpnagel
10. Claudio Sillero-Zubiri
11. Dmitri Petrov
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Sep 27, 2017Latest activity Jan 22, 2022
Aequatus: an open-source homology browser

This article has 5 authors:
1. Anil S Thanki
2. Nicola Soranzo
3. Javier Herrero
4. Wilfried Haerty
5. Robert P Davey
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 1, 2018Latest activity Jan 22, 2022
NAT/NCS2-hound: a webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family

This article has 10 authors:
1. A Chaliotis
2. P Vlastaridis
3. C Ntountoumi
4. M Botou
5. V Yalelis
6. P Lazou
7. E Tatsaki
8. D Mossialos
9. S Frillingos
10. G D Amoutzias
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 10, 2018Latest activity Jan 22, 2022
Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism

This article has 10 authors:
1. Xiaofeng Dong
2. Kittipong Chaisiri
3. Dong Xia
4. Stuart D Armstrong
5. Yongxiang Fang
6. Martin J Donnelly
7. Tatsuhiko Kadowaki
8. John W McGarry
9. Alistair C Darby
10. Benjamin L Makepeace
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 15, 2018Latest activity Jan 22, 2022
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

This article has 3 authors:
1. Szymon T Calus
2. Umer Z Ijaz
3. Ameet J Pinto
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 23, 2018Latest activity Jan 22, 2022
SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow ( Hirundo rustica rustica )

This article has 9 authors:
1. Giulio Formenti
2. Matteo Chiara
3. Lucy Poveda
4. Kees-Jan Francoijs
5. Andrea Bonisoli-Alquati
6. Luca Canova
7. Luca Gianfranceschi
8. David Stephen Horner
9. Nicola Saino
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 29, 2018Latest activity Jan 22, 2022
A network-based conditional genetic association analysis of the human metabolome

This article has 11 authors:
1. Y A Tsepilov
2. S Z Sharapov
3. O O Zaytseva
4. J Krumsek
5. C Prehn
6. J Adamski
7. G Kastenmüller
8. R Wang-Sattler
9. K Strauch
10. C Gieger
11. Y S Aulchenko
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Nov 29, 2018Latest activity Jan 22, 2022
A databank for intracellular electrophysiological mapping of the adult somatosensory cortex

This article has 9 authors:
1. Angelica da Silva Lantyer
2. Niccolò Calcini
3. Ate Bijlsma
4. Koen Kole
5. Melanie Emmelkamp
6. Manon Peeters
7. Wim J J Scheenen
8. Fleur Zeldenrust
9. Tansu Celikel
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2018Latest activity Jan 22, 2022
Prot-SpaM : fast alignment-free phylogeny reconstruction based on whole-proteome sequences

This article has 6 authors:
1. Chris-Andre Leimeister
2. Jendrik Schellhorn
3. Svenja Dörrer
4. Michael Gerth
5. Christoph Bleidorn
6. Burkhard Morgenstern
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 7, 2018Latest activity Jan 22, 2022
PhenoMeNal: processing and analysis of metabolomics data in the cloud

This article has 56 authors:
1. Kristian Peters
2. James Bradbury
3. Sven Bergmann
4. Marco Capuccini
5. Marta Cascante
6. Pedro de Atauri
7. Timothy M D Ebbels
8. Carles Foguet
9. Robert Glen
10. Alejandra Gonzalez-Beltran
11. Ulrich L Günther
12. Evangelos Handakas
13. Thomas Hankemeier
14. Kenneth Haug
15. Stephanie Herman
16. Petr Holub
17. Massimiliano Izzo
18. Daniel Jacob
19. David Johnson
20. Fabien Jourdan
21. Namrata Kale
22. Ibrahim Karaman
23. Bita Khalili
24. Payam Emami Khonsari
25. Kim Kultima
26. Samuel Lampa
27. Anders Larsson
28. Christian Ludwig
29. Pablo Moreno
30. Steffen Neumann
31. Jon Ander Novella
32. Claire O'Donovan
33. Jake T M Pearce
34. Alina Peluso
35. Marco Enrico Piras
36. Luca Pireddu
37. Michelle A C Reed
38. Philippe Rocca-Serra
39. Pierrick Roger
40. Antonio Rosato
41. Rico Rueedi
42. Christoph Ruttkies
43. Noureddin Sadawi
44. Reza M Salek
45. Susanna-Assunta Sansone
46. Vitaly Selivanov
47. Ola Spjuth
48. Daniel Schober
49. Etienne A Thévenot
50. Mattia Tomasoni
51. Merlijn van Rijswijk
52. Michael van Vliet
53. Mark R Viant
54. Ralf J M Weber
55. Gianluigi Zanetti
56. Christoph Steinbeck
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 7, 2018Latest activity Jan 22, 2022
Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data

This article has 5 authors:
1. Fadhl M Al-Akwaa
2. Breck Yunits
3. Sijia Huang
4. Hassam Alhajaji
5. Lana X Garmire
Reviewed by GigaScience

This article has 1 evaluationAppears in 1 listLatest version Dec 1, 2018Latest activity Jan 22, 2022

Evaluated articles

A multi-omics data simulator for complex disease studies and its application to evaluate multi-omics data analysis methods for disease classification

SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

A critical comparison of technologies for a plant genome sequencing project

Comparative Genomics and Genome Evolution in birds-of-paradise

Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat

Modelling genotypes in their microenvironment to predict single- and multi-cellular behaviour

CropSight: a scalable and open-source information management system for distributed plant phenotyping and IoT-based crop management

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

PiGx: reproducible genomics analysis pipelines with GNU Guix

Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

Aequatus: an open-source homology browser

NAT/NCS2-hound: a webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family

Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow ( Hirundo rustica rustica )

A network-based conditional genetic association analysis of the human metabolome

A databank for intracellular electrophysiological mapping of the adult somatosensory cortex

Prot-SpaM : fast alignment-free phylogeny reconstruction based on whole-proteome sequences

PhenoMeNal: processing and analysis of metabolomics data in the cloud

Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data